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Sample GSM383882 Query DataSets for GSM383882
Status Public on Mar 20, 2009
Title SAGE_Embryonic_stem_cell_HSF6_normal_p50_CL_SHES9
Sample type SAGE
Anchor NlaIII
Tag Count 224488
Tag Length 10
 
Source name embryonic stem cell, normal, cell line, hsf6, uc06, female, extracted short sage
Organism Homo sapiens
Characteristics organ/tissue: stem cell
tissue preparation: cell line
age: passage 50
sex: female
Biomaterial provider Meri Firpo
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 1332
Tagging_enzyme: Mme I
Library_producer: Jas Khattra, Gene Expression Lab
Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, BC
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 437 1946.65
AAAAAAAAAC 3 13.36
AAAAAAAAAG 2 8.91
AAAAAAAAAT 53 236.09
AAAAAAAACA 1 4.45
AAAAAAAAGA 5 22.27
AAAAAAAAGC 1 4.45
AAAAAAAAGG 3 13.36
AAAAAAAATA 1 4.45
AAAAAAAATC 3 13.36
AAAAAAAATG 9 40.09
AAAAAAACAG 2 8.91
AAAAAAAGAA 3 13.36
AAAAAAAGCA 1 4.45
AAAAAAAGGA 1 4.45
AAAAAAATAA 4 17.82
AAAAAAATCA 3 13.36
AAAAAAATGA 8 35.64
AAAAAAATGG 2 8.91
AAAAAAATTA 1 4.45

Total number of rows: 55275

Table truncated, full table size 989 Kbytes.




Supplementary data files not provided

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