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Sample GSM383890 Query DataSets for GSM383890
Status Public on Mar 20, 2009
Title SAGE_Fibroblasts_CL_postcrisis
Sample type SAGE
Anchor NlaIII
Tag Count 21833
Tag Length 10
 
Source name uncharacterized tissue, fibroblast, normal, cell line, non-normalized, short SAGE
Organism Homo sapiens
Characteristics organ/tissue: uncharacterized tissue
tissue preparation: cell line
sex: unknown
cell type: normal
other information: SV-40 treated fibroblasts grown in culture after crisis in which the ALT pathway of telomerase maintenance is used
Biomaterial provider John Murnane
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 44
Tagging_enzyme: BsmF I
Old_library_name: SAGE_Duke_post_crisis_fibroblasts
Library_producer: Troy Loging
Laboratory: Gregory Riggins, Duke University Medical Center
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 145 6641.32
AAAAAAAAAC 2 91.60
AAAAAAAAAG 4 183.21
AAAAAAAAAT 1 45.80
AAAAAAAAGA 1 45.80
AAAAAAAGAA 1 45.80
AAAAAAATCA 1 45.80
AAAAAAATTT 1 45.80
AAAAAACAGA 1 45.80
AAAAAACCCA 3 137.41
AAAAAACTCC 6 274.81
AAAAACCCAA 1 45.80
AAAAACGCCA 1 45.80
AAAAAGAACA 1 45.80
AAAAAGATCT 1 45.80
AAAAAGGGTT 1 45.80
AAAAAGGTCG 1 45.80
AAAAAGTAAT 1 45.80
AAAAATAAAA 1 45.80
AAAAATAAAG 4 183.21

Total number of rows: 8598

Table truncated, full table size 161 Kbytes.




Supplementary data files not provided

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