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| Status |
Public on Mar 20, 2009 |
| Title |
SAGE_Kidney_embryonic_CL_293+beta-catenin |
| Sample type |
SAGE |
| Anchor |
NlaIII
|
| Tag Count |
23519 |
| Tag Length |
10 |
| |
|
| Source name |
kidney, normal, cell line, embryo, non-normalized, short SAGE
|
| Organism |
Homo sapiens |
| Characteristics |
organ/tissue: kidney
tissue preparation: cell line
cell type: normal epithelium
other information: Kidney, embryonic cell line 293, induced cells, expressing beta-catenin
|
| Extracted molecule |
total RNA |
| Extraction protocol |
N/A
|
| |
|
| Description |
CGAP_Numeric_library_ID: 71
Tagging_enzyme: BsmF I
Old_library_name: SAGE_293-IND
Laboratory: Pat Morin, National Institute on Aging, NIH
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| |
|
| Submission date |
Mar 19, 2009 |
| Last update date |
Mar 20, 2009 |
| Contact name |
Cancer Genome Anatomy Project CGAP |
| E-mail(s) |
cgapbs-r@mail.nih.gov
|
| Phone |
301-496-1550
|
| URL |
http://cgap.nci.nih.gov/
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| Organization name |
National Cancer Institute
|
| Department |
Cancer Genome Anatomy Project
|
| Street address |
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20852 |
| Country |
USA |
| |
|
| Platform ID |
GPL4 |
| Series (2) |
| GSE14 |
Cancer Genome Anatomy Project (CGAP) SAGE Libraries |
| GSE15309 |
Cancer Genome Anatomy Project (CGAP) Human SAGE |
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| Data table header descriptions |
| TAG |
|
| COUNT |
|
| TPM |
tags per million |
| Data table |
| TAG |
COUNT |
TPM |
| AAAAAAAAAA |
74 |
3146.39 |
| AAAAAAAAAC |
1 |
42.52 |
| AAAAAAAAAG |
2 |
85.04 |
| AAAAAAAAAT |
1 |
42.52 |
| AAAAAAAGAA |
1 |
42.52 |
| AAAAAAATTT |
1 |
42.52 |
| AAAAAACATT |
1 |
42.52 |
| AAAAAACCCA |
8 |
340.15 |
| AAAAAACTCC |
7 |
297.63 |
| AAAAAAGAGC |
2 |
85.04 |
| AAAAAATCCC |
2 |
85.04 |
| AAAAAATGGA |
1 |
42.52 |
| AAAAAATTTG |
1 |
42.52 |
| AAAAAATTTT |
1 |
42.52 |
| AAAAACAAAT |
1 |
42.52 |
| AAAAACCAAA |
1 |
42.52 |
| AAAAACCATA |
3 |
127.56 |
| AAAAACCTAA |
1 |
42.52 |
| AAAAAGAAAA |
1 |
42.52 |
| AAAAAGAAGA |
2 |
85.04 |
Total number of rows: 9175
Table truncated, full table size 172 Kbytes.
| Supplementary data files not provided |
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