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Sample GSM383906 Query DataSets for GSM383906
Status Public on Mar 20, 2009
Title SAGE_Liver_cholangiocarcinoma_CL_K4
Sample type SAGE
Anchor NlaIII
Tag Count 52973
Tag Length 10
 
Source name liver, cell line, carcinoma, male, adult, short sage
Organism Homo sapiens
Characteristics organ/tissue: liver
tissue preparation: cell line
age: 58
sex: male
other information: Low invasive cells selected by Matrigel Coating Invasion Chambers
Biomaterial provider Dr. Banchob Sripa, Khon Kaen University
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 503
Tagging_enzyme: BsmF I
Library_producer: Kanlayanee Sawanyawisuth
Laboratory: Dr. Greg Riggins, Duke University Medical Center
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 114 2152.04
AAAAAAAAAG 1 18.88
AAAAAAAAGA 1 18.88
AAAAAAAAGC 1 18.88
AAAAAAAAGG 1 18.88
AAAAAAACCA 1 18.88
AAAAAAAGTG 1 18.88
AAAAAAATCA 4 75.51
AAAAAAATGC 1 18.88
AAAAAAATGT 2 37.76
AAAAAACATT 1 18.88
AAAAAACCCA 7 132.14
AAAAAACTCA 1 18.88
AAAAAACTCC 2 37.76
AAAAAACTTA 1 18.88
AAAAAAGTGG 1 18.88
AAAAAAGTTC 1 18.88
AAAAAATGGT 2 37.76
AAAAAATGTT 1 18.88
AAAAACAACA 1 18.88

Total number of rows: 16652

Table truncated, full table size 310 Kbytes.




Supplementary data files not provided

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