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Sample GSM383908 Query DataSets for GSM383908
Status Public on Mar 20, 2009
Title SAGE_Lung_adenocarcinoma_B_1
Sample type SAGE
Anchor NlaIII
Tag Count 36256
Tag Length 10
 
Source name lung, bulk, adenocarcinoma, adult, male, extracted short sage, poorly differentiated
Organism Homo sapiens
Characteristics organ/tissue: lung
tissue preparation: bulk
sex: male
cell type: poorly differentiated adenocarcinoma
other information: Stage IV lung cancer. Cells isolated from pleural effusions. Ten bp tags derived from long SAGE tags.
Biomaterial provider Kornelia Polyak, M.D., Ph.D.
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 964
Tagging_enzyme: Mme I
Library_producer: Kornelia Polyak, M.D., Ph.D.
Laboratory: Kornelia Polyak, M.D., Ph.D., Dana-Farber Cancer Institute
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 124 3420.12
AAAAAAAAAG 1 27.58
AAAAAAAAAT 1 27.58
AAAAAAAAGA 4 110.33
AAAAAAACAA 1 27.58
AAAAAAACTT 1 27.58
AAAAAAAGAA 1 27.58
AAAAAAATTA 1 27.58
AAAAAACATT 1 27.58
AAAAAACCCA 10 275.82
AAAAAACTCA 1 27.58
AAAAAAGAAA 1 27.58
AAAAAATCCC 1 27.58
AAAAAATGAA 1 27.58
AAAAACCAGG 1 27.58
AAAAACCATA 2 55.16
AAAAACTTAC 1 27.58
AAAAAGAAAA 3 82.74
AAAAAGAACT 1 27.58
AAAAAGCAAT 1 27.58

Total number of rows: 13105

Table truncated, full table size 245 Kbytes.




Supplementary data files not provided
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