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Sample GSM383910 Query DataSets for GSM383910
Status Public on Mar 20, 2009
Title SAGE_Lung_adenocarcinoma_MD_L9
Sample type SAGE
Anchor NlaIII
Tag Count 35916
Tag Length 10
 
Source name lung, microscope dissected, adenocarcinoma, short SAGE
Organism Homo sapiens
Characteristics organ/tissue: lung
tissue preparation: microscope dissected
sex: unknown
cell type: well differentiated adenocarcinoma with lymphoplasmatic infiltration
Biomaterial provider Johns Hopkins Hospital
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 586
Tagging_enzyme: BsmF I
Library_producer: Sequenced at Agencourt Biosciences
Laboratory: Dr. Jin Jen, Laboratory of Population Genetics
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 27 751.75
AAAAAAAACA 1 27.84
AAAAAAAAGA 1 27.84
AAAAAAAGCA 1 27.84
AAAAAACCCA 1 27.84
AAAAAACGTG 1 27.84
AAAAAACTCC 1 27.84
AAAAAAGAGA 1 27.84
AAAAAATGAA 1 27.84
AAAAAATGGG 1 27.84
AAAAACTCTG 1 27.84
AAAAAGCACA 1 27.84
AAAAAGCAGA 4 111.37
AAAAAGCTGA 1 27.84
AAAAAGTGAA 1 27.84
AAAAATAAAG 2 55.69
AAAAATACAC 1 27.84
AAAAATCGGC 2 55.69
AAAAATTGGA 1 27.84
AAAACACTAC 1 27.84

Total number of rows: 15131

Table truncated, full table size 282 Kbytes.




Supplementary data files not provided

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