GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM383921
Query DataSets for GSM383921
Status
Public on Mar 20, 2009
Title
SAGE_Muscle_Rhabdomyosarcoma_B_1
Sample type
SAGE
Anchor
NlaIII
Tag Count
61270
Tag Length
10
Source name
extracted short sage, muscle, juvenile, male, rhabdomyosarcoma, bulk
Organism
Homo sapiens
Characteristics
organ/tissue: muscle
tissue preparation: bulk
age: 5
sex: male
cell type: rhabdomyosarcoma
Biomaterial provider
CHTN Pediatric Division
Extracted molecule
total RNA
Extraction protocol
N/A
Description
CGAP_Numeric_library_ID: 1924
Tagging_enzyme: Mme I
Library_producer: Jennifer B. Edwards
Laboratory: Dr. Gregory Riggins
Submission date
Mar 19, 2009
Last update date
Mar 20, 2009
Contact name
Cancer Genome Anatomy Project CGAP
E-mail(s)
cgapbs-r@mail.nih.gov
Phone
301-496-1550
URL
http://cgap.nci.nih.gov/
Organization name
National Cancer Institute
Department
Cancer Genome Anatomy Project
Street address
City
Bethesda
State/province
MD
ZIP/Postal code
20852
Country
USA
Platform ID
GPL4
Series (2)
GSE14
Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309
Cancer Genome Anatomy Project (CGAP) Human SAGE
Data table header descriptions
TAG
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
AAAAAAAAAA
35
571.24
AAAAAAAAGA
2
32.64
AAAAAAAATG
3
48.96
AAAAAAACAA
1
16.32
AAAAAAAGAG
1
16.32
AAAAAAAGGG
1
16.32
AAAAAAAGTC
1
16.32
AAAAAAATAT
1
16.32
AAAAAAATCA
1
16.32
AAAAAACAGC
1
16.32
AAAAAACATT
3
48.96
AAAAAACCCA
6
97.93
AAAAAACTCC
1
16.32
AAAAAACTGA
1
16.32
AAAAAACTTC
1
16.32
AAAAAATCAA
1
16.32
AAAAAATCAG
1
16.32
AAAAAATCCA
1
16.32
AAAAAATCGA
2
32.64
AAAAAATGGA
2
32.64
Total number of rows:
21717
Table truncated, full table size
404 Kbytes
.
Supplementary data files not provided
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|