GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM383927

Query DataSets for GSM383927

Status

Public on Mar 20, 2009

Title

SAGE_Ovary_cystadenoma_CL_ML10-10

Sample type

SAGE

Anchor

NlaIII

Tag Count

55144

Tag Length

Source name

ovary, adenoma, cell line, benign hyperplasia, non-normalized, short SAGE, female

Organism

Homo sapiens

Characteristics

organ/tissue: ovary
tissue preparation: cell line
sex: female
cell type: cystadenoma immortalized with SV40
other information: Ovary, cystadenoma line ML10

Biomaterial provider

Louis Dubeau, U. Southern California

Extracted molecule

total RNA

Extraction protocol

N/A

Description

CGAP_Numeric_library_ID: 40
Tagging_enzyme: BsmF I
Old_library_name: SAGE_ML10-10
Library_producer: Colleen Hough
Laboratory: Pat Morin, National Institute on Aging, NIH
References: C. D. Hough et al., Cancer Res 60, 6281-7 (2000) [PUBMED=11103784]

Submission date

Mar 19, 2009

Last update date

Mar 20, 2009

Contact name

Cancer Genome Anatomy Project CGAP

E-mail(s)

cgapbs-r@mail.nih.gov

Phone

301-496-1550

URL

http://cgap.nci.nih.gov/

Organization name

National Cancer Institute

Department

Cancer Genome Anatomy Project

Street address

City

Bethesda

State/province

ZIP/Postal code

20852

Country

USA

Platform ID

GPL4

Series (2)

GSE14	Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309	Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM	tags per million

Data table
TAG	COUNT	TPM
AAAAAAAAAA	117	2121.72
AAAAAAAAAC	1	18.13
AAAAAAAAAG	2	36.27
AAAAAAAAAT	2	36.27
AAAAAAACAA	1	18.13
AAAAAAATAA	1	18.13
AAAAAACCCA	2	36.27
AAAAAACTCC	6	108.81
AAAAAAGCTG	1	18.13
AAAAAAGGAG	1	18.13
AAAAAAGGCC	1	18.13
AAAAAAGTTA	1	18.13
AAAAAATAAA	2	36.27
AAAAAATACA	1	18.13
AAAAACCATA	2	36.27
AAAAACCCTT	1	18.13
AAAAACTCCA	1	18.13
AAAAAGAAAA	2	36.27
AAAAAGAAAT	1	18.13
AAAAAGAATT	1	18.13

Total number of rows: 18684

Table truncated, full table size 349 Kbytes.

Supplementary data files not provided