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Sample GSM383931

Query DataSets for GSM383931

Status

Public on Mar 20, 2009

Title

SAGE_Pancreas_adenocarcinoma_B_91-16113

Sample type

SAGE

Anchor

NlaIII

Tag Count

33582

Tag Length

Source name

pancreas, epithelium, ductal, adenocarcinoma, bulk, tissue, non-normalized, short SAGE

Organism

Homo sapiens

Characteristics

organ/tissue: pancreas
tissue preparation: bulk
cell type: primary adenocarcinoma
other information: A frozen tumor sample was obtained from a colon cancer patient. Histopathology confirmed that the tumor sample contained at least 70% of tumor cells.

Biomaterial provider

Ralph Hruban

Extracted molecule

total RNA

Extraction protocol

N/A

Description

CGAP_Numeric_library_ID: 129
Tagging_enzyme: BsmF I
Old_library_name: SAGE_Panc_91-16113
Library_producer: Wei Zhou
Laboratory: Ken Kinzler and Bert Vogelstein, Johns Hopkins Medical Institute
References: L. Zhang et al., Science 276, 1268-1272 (1997) [PUBMED=9157888]|P. Argani et al., Cancer Res 61, 4320-4 (2001) [PUBMED=11389052]

Submission date

Mar 19, 2009

Last update date

Mar 20, 2009

Contact name

Cancer Genome Anatomy Project CGAP

E-mail(s)

cgapbs-r@mail.nih.gov

Phone

301-496-1550

URL

http://cgap.nci.nih.gov/

Organization name

National Cancer Institute

Department

Cancer Genome Anatomy Project

Street address

City

Bethesda

State/province

ZIP/Postal code

20852

Country

USA

Platform ID

GPL4

Series (2)

GSE14	Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309	Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM	tags per million

Data table
TAG	COUNT	TPM
AAAAAAAAAA	33	982.67
AAAAAAAAAC	3	89.33
AAAAAAAAAT	1	29.78
AAAAAAAATT	1	29.78
AAAAAAAGCA	1	29.78
AAAAAACAAA	1	29.78
AAAAAAGACA	1	29.78
AAAAAATAAG	1	29.78
AAAAACCACT	1	29.78
AAAAACCCTT	1	29.78
AAAAAGCACA	1	29.78
AAAAAGCCTT	1	29.78
AAAAATAAAA	2	59.56
AAAAATAAAC	2	59.56
AAAAATAAAG	2	59.56
AAAAATAAAT	1	29.78
AAAAATAACA	1	29.78
AAAAATAGAT	1	29.78
AAAAATGATC	1	29.78
AAAACAACTA	1	29.78

Total number of rows: 15793

Table truncated, full table size 294 Kbytes.

Supplementary data files not provided