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Status
Public on Mar 20, 2009
Title
SAGE_Pancreas_carcinoma_CL_PL45
Sample type
SAGE
Anchor
NlaIII
Tag Count
29557
Tag Length
10
Source name
pancreas, epithelium, ductal, carcinoma, cell line, non-normalized, short SAGE
Organism
Homo sapiens
Characteristics
organ/tissue: pancreas tissue preparation: cell line cell type: carcinoma
Extracted molecule
total RNA
Extraction protocol
N/A
Description
CGAP_Numeric_library_ID: 130 Tagging_enzyme: BsmF I Old_library_name: SAGE_PL45 Library_producer: Wei Zhou Laboratory: Ken Kinzler and Bert Vogelstein, Johns Hopkins Medical Institute References: B. Ryu et al., Cancer Res 62, 819-26 (2002) [PUBMED=11830538]|L. Zhang et al., Science 276, 1268-1272 (1997) [PUBMED=9157888]
Submission date
Mar 19, 2009
Last update date
Mar 20, 2009
Contact name
Cancer Genome Anatomy Project CGAP
E-mail(s)
cgapbs-r@mail.nih.gov
Phone
301-496-1550
URL
http://cgap.nci.nih.gov/
Organization name
National Cancer Institute
Department
Cancer Genome Anatomy Project
Street address
City
Bethesda
State/province
MD
ZIP/Postal code
20852
Country
USA
Platform ID
GPL4
Series (2)
GSE14
Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309
Cancer Genome Anatomy Project (CGAP) Human SAGE
Data table header descriptions
TAG
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
AAAAAAAAAA
62
2097.64
AAAAAAAAAC
1
33.83
AAAAAAAAAG
3
101.50
AAAAAAAAAT
1
33.83
AAAAAAAATA
1
33.83
AAAAAAAGAA
1
33.83
AAAAAAATTT
1
33.83
AAAAAACATT
1
33.83
AAAAAACCCA
5
169.16
AAAAAACTCC
1
33.83
AAAAAACTTT
1
33.83
AAAAAAGATG
1
33.83
AAAAAAGCTG
1
33.83
AAAAAATTTG
1
33.83
AAAAACCAAA
1
33.83
AAAAACCATA
3
101.50
AAAAACCCAA
1
33.83
AAAAACGGGG
1
33.83
AAAAAGAAGC
1
33.83
AAAAAGCAGA
4
135.33
Total number of rows: 11121 Table truncated, full table size 208 Kbytes .Supplementary data files not provided