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Sample GSM383940

Query DataSets for GSM383940

Status

Public on Mar 20, 2009

Title

SAGE_Pelvis_mixoid_chondrosarcoma_grade2_B_UIHT0

Sample type

SAGE

Anchor

NlaIII

Tag Count

83577

Tag Length

Source name

bone, mixoid, chondrosarcoma, grade ii, bulk, adult, male, short sage

Organism

Homo sapiens

Characteristics

organ/tissue: bone
tissue preparation: bulk
age: 37 years
sex: male
mutations: N/A

Biomaterial provider

S. Gitelis, Dept. of Orthopaedics (Rush-Presbyterian -St Luke's Medical Center, Chicago, Illinois )

Extracted molecule

total RNA

Extraction protocol

N/A

Description

CGAP_Numeric_library_ID: 1367
Tagging_enzyme: BsmF I
Library_producer: S. Malchenko
Laboratory: B. Soares Laboratory (University of Iowa), contributed to the National Cancer Institute Genome Anatomy Project

Submission date

Mar 19, 2009

Last update date

Mar 20, 2009

Contact name

Cancer Genome Anatomy Project CGAP

E-mail(s)

cgapbs-r@mail.nih.gov

Phone

301-496-1550

URL

http://cgap.nci.nih.gov/

Organization name

National Cancer Institute

Department

Cancer Genome Anatomy Project

Street address

City

Bethesda

State/province

ZIP/Postal code

20852

Country

USA

Platform ID

GPL4

Series (2)

GSE14	Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309	Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM	tags per million

Data table
TAG	COUNT	TPM
AAAAAAAAAA	11	131.62
AAAAAAAAAC	1	11.97
AAAAAAAAAG	1	11.97
AAAAAACGCC	1	11.97
AAAAAACTCC	1	11.97
AAAAAAGAAG	1	11.97
AAAAAAGCAC	1	11.97
AAAAAAGCAG	2	23.93
AAAAAAGCTG	1	11.97
AAAAAAGGAG	3	35.90
AAAAAATGCG	1	11.97
AAAAACCAAC	1	11.97
AAAAACTGAG	2	23.93
AAAAACTGGG	1	11.97
AAAAAGCAAA	1	11.97
AAAAAGCAAG	2	23.93
AAAAAGCAGA	16	191.44
AAAAAGCAGG	1	11.97
AAAAAGCTGC	4	47.86
AAAAAGGTGA	1	11.97

Total number of rows: 21872

Table truncated, full table size 408 Kbytes.

Supplementary data files not provided