GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM383957

Query DataSets for GSM383957

Status

Public on Mar 20, 2009

Title

SAGE_Prostate_carcinoma_CL_PC3_AS2

Sample type

SAGE

Anchor

NlaIII

Tag Count

40768

Tag Length

Source name

prostate, carcinoma, cell line, non-normalized, short SAGE

Organism

Homo sapiens

Characteristics

organ/tissue: prostate
tissue preparation: cell line
sex: male
cell type: prostate carcinoma
mutations: Transfected with JNK antisense oligos
other information: PC3 cells, AS2 treatment, total number of 42,236 SAGE tags sequenced. 40,768 SAGE tags analyzed after clean-up (extraction of poly(A) tags, linker-generated tags, and tags originated from clones producing 4 tags or less).

Biomaterial provider

ATCC

Extracted molecule

total RNA

Extraction protocol

N/A

Description

CGAP_Numeric_library_ID: 154
Tagging_enzyme: BsmF I
Library_producer: Nikki Holbrook
Laboratory: Geriatrics Section, Yale University School of Medicine
References: O. Potapova et al., Cancer Res 62, 3257-63 (2002) [PUBMED=12036942]

Submission date

Mar 19, 2009

Last update date

Mar 20, 2009

Contact name

Cancer Genome Anatomy Project CGAP

E-mail(s)

cgapbs-r@mail.nih.gov

Phone

301-496-1550

URL

http://cgap.nci.nih.gov/

Organization name

National Cancer Institute

Department

Cancer Genome Anatomy Project

Street address

City

Bethesda

State/province

ZIP/Postal code

20852

Country

USA

Platform ID

GPL4

Series (2)

GSE14	Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309	Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM	tags per million

Data table
TAG	COUNT	TPM
AAAAAAAAAC	1	24.53
AAAAAAAAGA	1	24.53
AAAAAAAATA	1	24.53
AAAAAAAATC	1	24.53
AAAAAAACAG	1	24.53
AAAAAAACAT	1	24.53
AAAAAAACTA	1	24.53
AAAAAAAGCA	2	49.06
AAAAAAAGCT	1	24.53
AAAAAAATCT	1	24.53
AAAAAAATGA	1	24.53
AAAAAAATGC	1	24.53
AAAAAACCCA	2	49.06
AAAAAACCCC	1	24.53
AAAAAACCCT	1	24.53
AAAAAACCTC	1	24.53
AAAAAACGCC	1	24.53
AAAAAACTCC	1	24.53
AAAAAACTGA	1	24.53
AAAAAAGACA	1	24.53

Total number of rows: 20661

Table truncated, full table size 384 Kbytes.

Supplementary data files not provided