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Sample GSM3840

Query DataSets for GSM3840

Status

Public on Feb 05, 2003

Title

SAGEHR96R

Sample type

SAGE

Anchor

NlaIII

Tag Count

12273

Tag Length

Source name

hand-selected pancreatic islet

Organism

Homo sapiens

Extracted molecule

total RNA

Description

Individual islets were isolated using a standard protocol of an intraductal Liberase perfusion, gentle mechanical dissociation, and a continuous gradient of Hypaque Euroficoll on a refrigerated COBE 2991. 300 islets were then hand-selected.
Keywords = pancreas, islets, hand-selected
Lot batch = HR96

Submission date

Feb 05, 2003

Last update date

Nov 19, 2008

Contact name

Corentin Cras-Méneur

E-mail(s)

ccrasmen@im.wustl.edu

Phone

314-747-0414

URL

http://www.wustl.edu/

Organization name

Washington University School of Medicine

Department

Metabolism Division

Lab

M. A. Permutt

Street address

660 S. Euclid

City

Saint Louis

State/province

ZIP/Postal code

63110

Country

USA

Platform ID

GPL4

Series (1)

GSE278

Pancreas and islet gene expression

Data table header descriptions
TAG	sequence of the tag
COUNT	count of the tag
TPM	tags per million

Data table
TAG	COUNT	TPM
GCCCTGTGGA	1276	103968.06
TAACCAAGAG	274	22325.43
GCAGAAGGAC	134	10918.28
CCAATAAATA	123	10022.00
TCCCCGTACA	89	7251.69
TTCATACACC	87	7088.73
CCCATCGTCC	82	6681.33
CACCTAATTG	78	6355.41
TCCCTATTAA	77	6273.93
ACTTTTTCAA	65	5296.18
GAGCACACCC	63	5133.22
TAGGTTGTCT	49	3992.50
GAACACAAAA	48	3911.02
ATCTGAAGCA	47	3829.54
AATGCAAGCA	45	3666.59
TCCTCAAAAC	43	3503.63
TGATTTCACT	43	3503.63
CTTATGACAA	41	3340.67
TCAGGGTGAT	40	3259.19
AGCCCTACAA	40	3259.19

Total number of rows: 5637

Table truncated, full table size 106 Kbytes.

Supplementary data files not provided