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Sample GSM384059 Query DataSets for GSM384059
Status Public on Mar 20, 2009
Title LSAGE_Breast_carcinoma_associated_stroma_B_IDC7
Sample type SAGE
Anchor NlaIII
Tag Count 68024
Tag Length 17
 
Source name breast, stroma, tumor associated, bulk, long sage, adult, female
Organism Homo sapiens
Characteristics organ/tissue: mammary gland
tissue preparation: bulk
age: 47
sex: female
cell type: invasive breast cancer ER+, PR+, Her2-, grade II
other information: Library name in Cancer Cell, 2004, 6(1):17-32 "I-STR-7-fibroblast"
Biomaterial provider Andrea Richardson, M.D., Ph.D.
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 646
Tagging_enzyme: Mme I
Library_producer: Kornelia Polyak, M.D., Ph.D.
Laboratory: Polyak lab, Dana-Farber Cancer Institute
References: Allinen et al. Cancer Cell. 2004 Jul;6(1):17-32. [PUBMED=15261139]
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL1485
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE1902 Cancer Genome Anatomy Project (CGAP) Human LongSAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAAAAAAAAA 137 2014.00
AAAAAAAAAAAAAAAAC 11 161.71
AAAAAAAAAAAAAAAAG 18 264.61
AAAAAAAAAAAAAAAAT 19 279.31
AAAAAAAAAAAAAAACA 3 44.10
AAAAAAAAAAAAAAACC 3 44.10
AAAAAAAAAAAAAAACT 3 44.10
AAAAAAAAAAAAAAAGA 4 58.80
AAAAAAAAAAAAAAAGC 2 29.40
AAAAAAAAAAAAAAAGG 1 14.70
AAAAAAAAAAAAAAAGT 4 58.80
AAAAAAAAAAAAAAATA 6 88.20
AAAAAAAAAAAAAAATG 1 14.70
AAAAAAAAAAAAAACAA 2 29.40
AAAAAAAAAAAAAACAC 1 14.70
AAAAAAAAAAAAAACAG 1 14.70
AAAAAAAAAAAAAAGAA 3 44.10
AAAAAAAAAAAAAAGAC 1 14.70
AAAAAAAAAAAAAAGAG 1 14.70
AAAAAAAAAAAAAAGCC 1 14.70

Total number of rows: 32628

Table truncated, full table size 830 Kbytes.




Supplementary data files not provided
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