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| Status |
Public on Mar 20, 2009 |
| Title |
LSAGE_Breast_normal_epithelium_CD44+_AP_N2 |
| Sample type |
SAGE |
| Anchor |
NlaIII
|
| Tag Count |
56008 |
| Tag Length |
17 |
| |
|
| Source name |
human, breast/mammary gland, antibody purified, normal, normal breast tissue reduction, adult, female, long sage
|
| Organism |
Homo sapiens |
| Characteristics |
organ/tissue: mammary gland
tissue preparation: antibody purified
age: 22
sex: female
cell type: Normal breast tissue reduction
other information: cells purified using CD44 antibody, these cells are CD44+ mammary epithelial stem cells
|
| Biomaterial provider |
Andrea Richardson, MD,PhD, BWH
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| Extracted molecule |
total RNA |
| Extraction protocol |
N/A
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| |
|
| Description |
CGAP_Numeric_library_ID: 2179
Tagging_enzyme: Mme I
Library_producer: Michail Shipitsin, PhD, DFCI
Laboratory: Polyak Lab, DFCI
References: Shipitsin et al. Cancer Cell 2007 11: 259-273. [PUBMED=17349583]
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| |
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| Submission date |
Mar 19, 2009 |
| Last update date |
Mar 20, 2009 |
| Contact name |
Cancer Genome Anatomy Project CGAP |
| E-mail(s) |
cgapbs-r@mail.nih.gov
|
| Phone |
301-496-1550
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| URL |
http://cgap.nci.nih.gov/
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| Organization name |
National Cancer Institute
|
| Department |
Cancer Genome Anatomy Project
|
| Street address |
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20852 |
| Country |
USA |
| |
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| Platform ID |
GPL1485 |
| Series (2) |
| GSE14 |
Cancer Genome Anatomy Project (CGAP) SAGE Libraries |
| GSE1902 |
Cancer Genome Anatomy Project (CGAP) Human LongSAGE |
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| Data table header descriptions |
| TAG |
|
| COUNT |
|
| TPM |
tags per million |
| Data table |
| TAG |
COUNT |
TPM |
| AAAAAAAAAAAAAAAAA |
3 |
53.56 |
| AAAAAAAAAAAAAAAAG |
1 |
17.85 |
| AAAAAAAAAAAAGAAAA |
1 |
17.85 |
| AAAAAAAAATAGAAAAA |
1 |
17.85 |
| AAAAAAAACCAAAAGTG |
1 |
17.85 |
| AAAAAAAAGGATGAAGG |
1 |
17.85 |
| AAAAAAACTATGCTGCT |
1 |
17.85 |
| AAAAAAACTGAAAAAAA |
1 |
17.85 |
| AAAAAAAGGAGAAAAGG |
1 |
17.85 |
| AAAAAAAGTAATACCTT |
1 |
17.85 |
| AAAAAAATCAATTGAAA |
1 |
17.85 |
| AAAAAAATTTCCAACGA |
1 |
17.85 |
| AAAAAAATTTCCAATGA |
9 |
160.69 |
| AAAAAACTACTTCAAAA |
1 |
17.85 |
| AAAAAACTCCAAATAAG |
2 |
35.71 |
| AAAAAAGGAGAAAAGGA |
2 |
35.71 |
| AAAAAAGTTACAAATAT |
1 |
17.85 |
| AAAAAATAAACGATAAA |
1 |
17.85 |
| AAAAAATAATTTTGCAA |
1 |
17.85 |
| AAAAAATGGTTGATGGA |
1 |
17.85 |
Total number of rows: 23843
Table truncated, full table size 607 Kbytes.
| Supplementary data files not provided |
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