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Sample GSM384088 Query DataSets for GSM384088
Status Public on Mar 20, 2009
Title LSAGE_Breast_phyllodes_tumor_fibroblasts_AP_070202
Sample type SAGE
Anchor NlaIII
Tag Count 59575
Tag Length 17
 
Source name breast, neoplasia, high grade, poorly differentiated, bulk, long sage, adult, female
Organism Homo sapiens
Characteristics organ/tissue: mammary gland
tissue preparation: bulk
age: 52
sex: female
cell type: recurrent phyllodes tumor, malignant, high grade, poorly differentiated
other information: Library name in Cancer Cell, 2004, 6(1):17-32 "PHY"
Biomaterial provider Andrea Richardson, MD, PhD
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 683
Tagging_enzyme: Mme I
Library_producer: Kornelia Polyak, MD,PhD
Laboratory: Polyak laboratory Dana-Farber Cancer Institute
References: Allinen et al. Cancer Cell. 2004 Jul;6(1):17-32. [PUBMED=15261139]
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL1485
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE1902 Cancer Genome Anatomy Project (CGAP) Human LongSAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAAAAAAAAA 69 1158.20
AAAAAAAAAAAAAAAAC 10 167.86
AAAAAAAAAAAAAAAAG 4 67.14
AAAAAAAAAAAAAAAAT 9 151.07
AAAAAAAAAAAAAAACA 1 16.79
AAAAAAAAAAAAAAACT 2 33.57
AAAAAAAAAAAAAAAGA 1 16.79
AAAAAAAAAAAAAAAGC 1 16.79
AAAAAAAAAAAAAAAGG 1 16.79
AAAAAAAAAAAAAAAGT 4 67.14
AAAAAAAAAAAAAAATC 3 50.36
AAAAAAAAAAAAAAATT 1 16.79
AAAAAAAAAAAAAACAA 3 50.36
AAAAAAAAAAAAAACCA 2 33.57
AAAAAAAAAAAAAAGAA 1 16.79
AAAAAAAAAAAAAAGCG 2 33.57
AAAAAAAAAAAAAAGGC 2 33.57
AAAAAAAAAAAAAAGGG 1 16.79
AAAAAAAAAAAAAAGTA 1 16.79
AAAAAAAAAAAAAAGTT 1 16.79

Total number of rows: 29515

Table truncated, full table size 751 Kbytes.




Supplementary data files not provided

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