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Sample GSM384101 Query DataSets for GSM384101
Status Public on Mar 20, 2009
Title LSAGE_Embryonic_stem_cell_HES3_normal_p16_CL_SHE10
Sample type SAGE
Anchor NlaIII
Tag Count 205353
Tag Length 17
 
Source name embryonic stem cell, normal, cell line, hes3, es03, female, long sage
Organism Homo sapiens
Characteristics organ/tissue: stem cell
tissue preparation: cell line
age: passage 16
sex: female
Biomaterial provider Martin Pera
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 1312
Tagging_enzyme: Mme I
Library_producer: Jas Khattra, Gene Expression Lab
Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, BC
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL1485
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE1902 Cancer Genome Anatomy Project (CGAP) Human LongSAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAAAAAAAAA 337 1641.08
AAAAAAAAAAAAAAAAC 9 43.83
AAAAAAAAAAAAAAAAG 22 107.13
AAAAAAAAAAAAAAAAT 2 9.74
AAAAAAAAAAAAAAAGA 2 9.74
AAAAAAAAAAAAAATTC 1 4.87
AAAAAAAAAAAAAGAAA 3 14.61
AAAAAAAAAAAATAAAA 1 4.87
AAAAAAAAAAACAAAAA 1 4.87
AAAAAAAAAAGAAAAAA 1 4.87
AAAAAAAAATCTTGCAC 1 4.87
AAAAAAAACAAAAAAAA 1 4.87
AAAAAAAAGAAAAAAAG 1 4.87
AAAAAAAAGAAGTTTTG 2 9.74
AAAAAAAAGGCATCAAC 8 38.96
AAAAAAAATCAGGCACC 2 9.74
AAAAAAAATGAAGTAGG 3 14.61
AAAAAAAATGAAGTAGT 1 4.87
AAAAAAAATGGGCTTTG 1 4.87
AAAAAAAATTTCCAATG 1 4.87

Total number of rows: 48665

Table truncated, full table size 1202 Kbytes.




Supplementary data files not provided

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