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Sample GSM384104 Query DataSets for GSM384104
Status Public on Mar 20, 2009
Title LSAGE_Embryonic_stem_cell_normal_CL_hs0238
Sample type SAGE
Anchor NlaIII
Tag Count 3636083
Tag Length 17
 
Source name stem cell, normal, antibody purified, long sage, slx-sage, solexa sage, male
Organism Homo sapiens
Characteristics organ/tissue: stem cell
tissue preparation: antibody purified
sex: male
other information: SLX-SAGE
Biomaterial provider James Thomson, Wisconsin Regional Primate Research Centre
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 2253
Tagging_enzyme: Mme I
Library_producer: Martin Hirst, Functional Genomics Lab
Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, Canada
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL1485
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15314 Cancer Genome Anatomy Project (CGAP) Human Solexa LongSAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAAAAAAAAA 6263 1722.46
AAAAAAAAAAAAAAAAC 459 126.23
AAAAAAAAAAAAAAAAG 112 30.80
AAAAAAAAAAAAAAAAT 947 260.45
AAAAAAAAAAAAAAACA 73 20.08
AAAAAAAAAAAAAAACC 30 8.25
AAAAAAAAAAAAAAACT 25 6.88
AAAAAAAAAAAAAAAGA 47 12.93
AAAAAAAAAAAAAAAGC 22 6.05
AAAAAAAAAAAAAAAGG 9 2.48
AAAAAAAAAAAAAAAGT 11 3.03
AAAAAAAAAAAAAAATA 79 21.73
AAAAAAAAAAAAAAATC 114 31.35
AAAAAAAAAAAAAAATG 16 4.40
AAAAAAAAAAAAAAATT 57 15.68
AAAAAAAAAAAAAACAA 55 15.13
AAAAAAAAAAAAAACAC 14 3.85
AAAAAAAAAAAAAACAG 3 0.83
AAAAAAAAAAAAAACAT 14 3.85
AAAAAAAAAAAAAACCC 4 1.10

Total number of rows: 293179

Table truncated, full table size 7194 Kbytes.




Supplementary data files not provided

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