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Status
Public on Mar 20, 2009
Title
LSAGE_Embryonic_stem_cell_normal_CL_hs0238
Sample type
SAGE
Anchor
NlaIII
Tag Count
3636083
Tag Length
17
Source name
stem cell, normal, antibody purified, long sage, slx-sage, solexa sage, male
Organism
Homo sapiens
Characteristics
organ/tissue: stem cell tissue preparation: antibody purified sex: male other information: SLX-SAGE
Biomaterial provider
James Thomson, Wisconsin Regional Primate Research Centre
Extracted molecule
total RNA
Extraction protocol
N/A
Description
CGAP_Numeric_library_ID: 2253 Tagging_enzyme: Mme I Library_producer: Martin Hirst, Functional Genomics Lab Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, Canada
Submission date
Mar 19, 2009
Last update date
Mar 20, 2009
Contact name
Cancer Genome Anatomy Project CGAP
E-mail(s)
cgapbs-r@mail.nih.gov
Phone
301-496-1550
URL
http://cgap.nci.nih.gov/
Organization name
National Cancer Institute
Department
Cancer Genome Anatomy Project
Street address
City
Bethesda
State/province
MD
ZIP/Postal code
20852
Country
USA
Platform ID
GPL1485
Series (2)
GSE14
Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15314
Cancer Genome Anatomy Project (CGAP) Human Solexa LongSAGE
Data table header descriptions
TAG
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
AAAAAAAAAAAAAAAAA
6263
1722.46
AAAAAAAAAAAAAAAAC
459
126.23
AAAAAAAAAAAAAAAAG
112
30.80
AAAAAAAAAAAAAAAAT
947
260.45
AAAAAAAAAAAAAAACA
73
20.08
AAAAAAAAAAAAAAACC
30
8.25
AAAAAAAAAAAAAAACT
25
6.88
AAAAAAAAAAAAAAAGA
47
12.93
AAAAAAAAAAAAAAAGC
22
6.05
AAAAAAAAAAAAAAAGG
9
2.48
AAAAAAAAAAAAAAAGT
11
3.03
AAAAAAAAAAAAAAATA
79
21.73
AAAAAAAAAAAAAAATC
114
31.35
AAAAAAAAAAAAAAATG
16
4.40
AAAAAAAAAAAAAAATT
57
15.68
AAAAAAAAAAAAAACAA
55
15.13
AAAAAAAAAAAAAACAC
14
3.85
AAAAAAAAAAAAAACAG
3
0.83
AAAAAAAAAAAAAACAT
14
3.85
AAAAAAAAAAAAAACCC
4
1.10
Total number of rows: 293179 Table truncated, full table size 7194 Kbytes .Supplementary data files not provided