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Status |
Public on Mar 20, 2009 |
Title |
LSAGE_Esophagus_Dysplasia_B_LGD01 |
Sample type |
SAGE |
Anchor |
NlaIII
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Tag Count |
74904 |
Tag Length |
17 |
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Source name |
other, bulk, pre-cancer, esophagus, long sage, adult, male
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Organism |
Homo sapiens |
Characteristics |
organ/tissue: other tissue preparation: bulk age: 69 sex: male cell type: low grade dysplasia
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Biomaterial provider |
Dr. Mimi Canto, Dr. Jean Wang, Dr. Elizabeth Montgomery
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Extracted molecule |
total RNA |
Extraction protocol |
N/A
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Description |
CGAP_Numeric_library_ID: 2143 Tagging_enzyme: Mme I Library_producer: Dr. Hector Alvarez Laboratory: Dr. Gregory Riggins and Dr. Anirban Maitra
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Submission date |
Mar 19, 2009 |
Last update date |
Mar 20, 2009 |
Contact name |
Cancer Genome Anatomy Project CGAP |
E-mail(s) |
cgapbs-r@mail.nih.gov
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Phone |
301-496-1550
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URL |
http://cgap.nci.nih.gov/
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Organization name |
National Cancer Institute
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Department |
Cancer Genome Anatomy Project
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Street address |
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City |
Bethesda |
State/province |
MD |
ZIP/Postal code |
20852 |
Country |
USA |
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Platform ID |
GPL1485 |
Series (2) |
GSE14 |
Cancer Genome Anatomy Project (CGAP) SAGE Libraries |
GSE1902 |
Cancer Genome Anatomy Project (CGAP) Human LongSAGE |
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Data table header descriptions |
TAG |
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COUNT |
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TPM |
tags per million |
Data table |
TAG |
COUNT |
TPM |
AAAAAAAAAAAAAAAAA |
9 |
120.15 |
AAAAAAAAAAAAAAAAG |
2 |
26.70 |
AAAAAAAAAACGCAAAA |
1 |
13.35 |
AAAAAAAAATCTTGTGC |
1 |
13.35 |
AAAAAAAACCACCACAA |
1 |
13.35 |
AAAAAAAAGAAGTTTTA |
1 |
13.35 |
AAAAAAAAGAAGTTTTG |
3 |
40.05 |
AAAAAAAATTTTTAAAT |
1 |
13.35 |
AAAAAAACAAAAAAAAT |
1 |
13.35 |
AAAAAAACACTCTGAGG |
1 |
13.35 |
AAAAAAACATTTTCAGA |
1 |
13.35 |
AAAAAAACCAACCCAAA |
1 |
13.35 |
AAAAAAACCCGTTTCCA |
1 |
13.35 |
AAAAAAACCTGTATGCA |
1 |
13.35 |
AAAAAAACGGGGCCTCA |
1 |
13.35 |
AAAAAAACTATCTCAGA |
1 |
13.35 |
AAAAAAACTCATCATCA |
1 |
13.35 |
AAAAAAAGAAAAAAAAA |
1 |
13.35 |
AAAAAAAGAAATGTAGA |
1 |
13.35 |
AAAAAAATCAATATTAA |
1 |
13.35 |
Total number of rows: 45796
Table truncated, full table size 1164 Kbytes.
Supplementary data files not provided |
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