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| Status |
Public on Mar 20, 2009 |
| Title |
LSAGE_Retina_Retinoblastoma_B_1 |
| Sample type |
SAGE |
| Anchor |
NlaIII
|
| Tag Count |
88490 |
| Tag Length |
17 |
| |
|
| Source name |
retina, bulk, retinoblastoma, long sage, poorly differentiated
|
| Organism |
Homo sapiens |
| Characteristics |
organ/tissue: retina
tissue preparation: bulk
age: 3
sex: female
cell type: Bilateral retinoblastoma, poorly differentiated, left orbit
|
| Biomaterial provider |
CHTN Pediatric Division
|
| Extracted molecule |
total RNA |
| Extraction protocol |
N/A
|
| |
|
| Description |
CGAP_Numeric_library_ID: 1883
Tagging_enzyme: Mme I
Library_producer: Jennifer B. Edwards
Laboratory: Dr. Gregory Riggins
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| |
|
| Submission date |
Mar 19, 2009 |
| Last update date |
Mar 20, 2009 |
| Contact name |
Cancer Genome Anatomy Project CGAP |
| E-mail(s) |
cgapbs-r@mail.nih.gov
|
| Phone |
301-496-1550
|
| URL |
http://cgap.nci.nih.gov/
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| Organization name |
National Cancer Institute
|
| Department |
Cancer Genome Anatomy Project
|
| Street address |
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20852 |
| Country |
USA |
| |
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| Platform ID |
GPL1485 |
| Series (2) |
| GSE14 |
Cancer Genome Anatomy Project (CGAP) SAGE Libraries |
| GSE1902 |
Cancer Genome Anatomy Project (CGAP) Human LongSAGE |
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| Data table header descriptions |
| TAG |
|
| COUNT |
|
| TPM |
tags per million |
| Data table |
| TAG |
COUNT |
TPM |
| AAAAAAAAAAAAAAAAA |
40 |
452.03 |
| AAAAAAAAAAAAAAAAC |
1 |
11.30 |
| AAAAAAAAAAAAAAAAG |
3 |
33.90 |
| AAAAAAAAAAAAAAAAT |
1 |
11.30 |
| AAAAAAAAAAAAAAAGA |
2 |
22.60 |
| AAAAAAAAAAAACAAAA |
2 |
22.60 |
| AAAAAAAAAAAAGAAAA |
1 |
11.30 |
| AAAAAAAAAAGTTATTT |
1 |
11.30 |
| AAAAAAAAAATATGGTA |
1 |
11.30 |
| AAAAAAAAACAAAAAAA |
1 |
11.30 |
| AAAAAAAAAGAAGTTTT |
2 |
22.60 |
| AAAAAAAAATAATAATT |
1 |
11.30 |
| AAAAAAAAATCTTGCAC |
3 |
33.90 |
| AAAAAAAAGAAAGAAGG |
1 |
11.30 |
| AAAAAAAAGAAGTTTTG |
5 |
56.50 |
| AAAAAAAATATTTTTTA |
1 |
11.30 |
| AAAAAAAATGAAGTAGG |
1 |
11.30 |
| AAAAAAACAGTGACTTT |
1 |
11.30 |
| AAAAAAACCCAACCCAG |
1 |
11.30 |
| AAAAAAACTATTTATGC |
1 |
11.30 |
Total number of rows: 32584
Table truncated, full table size 830 Kbytes.
| Supplementary data files not provided |
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