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Status
Public on Mar 20, 2009
Title
LSAGE_Skin_Normal_B_hs0281
Sample type
SAGE
Anchor
NlaIII
Tag Count
6517089
Tag Length
17
Source name
skin, normal, bulk, benign hyperplasia, long sage, slx-sage, solexa sage, male, seborrheic keratosis
Organism
Homo sapiens
Characteristics
organ/tissue: skin tissue preparation: bulk sex: male cell type: Seborrheic Keratosis other information: SLX-SAGE
Biomaterial provider
Youwen Zhou Lab, University of British Columbia
Extracted molecule
total RNA
Extraction protocol
N/A
Description
CGAP_Numeric_library_ID: 2325 Tagging_enzyme: Mme I Library_producer: Martin Hirst, Functional Genomics Lab Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, Canada
Submission date
Mar 19, 2009
Last update date
Mar 20, 2009
Contact name
Cancer Genome Anatomy Project CGAP
E-mail(s)
cgapbs-r@mail.nih.gov
Phone
301-496-1550
URL
http://cgap.nci.nih.gov/
Organization name
National Cancer Institute
Department
Cancer Genome Anatomy Project
Street address
City
Bethesda
State/province
MD
ZIP/Postal code
20852
Country
USA
Platform ID
GPL1485
Series (2)
GSE14
Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15314
Cancer Genome Anatomy Project (CGAP) Human Solexa LongSAGE
Data table header descriptions
TAG
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
AAAAAAAAAAAAAAAAA
4429
679.60
AAAAAAAAAAAAAAAAC
207
31.76
AAAAAAAAAAAAAAAAG
55
8.44
AAAAAAAAAAAAAAAAT
333
51.10
AAAAAAAAAAAAAAACA
13
1.99
AAAAAAAAAAAAAAACC
15
2.30
AAAAAAAAAAAAAAACT
9
1.38
AAAAAAAAAAAAAAAGA
13
1.99
AAAAAAAAAAAAAAAGC
17
2.61
AAAAAAAAAAAAAAAGG
2
0.31
AAAAAAAAAAAAAAAGT
5
0.77
AAAAAAAAAAAAAAATA
20
3.07
AAAAAAAAAAAAAAATC
40
6.14
AAAAAAAAAAAAAAATG
12
1.84
AAAAAAAAAAAAAAATT
19
2.92
AAAAAAAAAAAAAACAA
15
2.30
AAAAAAAAAAAAAACAC
4
0.61
AAAAAAAAAAAAAAGAA
12
1.84
AAAAAAAAAAAAAAGAC
2
0.31
AAAAAAAAAAAAAAGAT
2
0.31
Total number of rows: 189594 Table truncated, full table size 4678 Kbytes .Supplementary data files not provided