NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM384394 Query DataSets for GSM384394
Status Public on Mar 20, 2009
Title mSAGE_T_cell_normal_anti-CD3_AP_CD4+CD25-
Sample type SAGE
Anchor NlaIII
Tag Count 21279
Tag Length 10
 
Source name t-cell, antibody purified, normal, spleen lymphocyte, pcr directed strategy, cdna template, anti-cd3, short sage
Organism Mus musculus
Characteristics organ/tissue: white blood cells
tissue preparation: antibody purified
sex: unknown
other information: CD4+CD25negative spleen cells were purified from naive CBA/Ca mice by MACS sorting. T cells were activated overnight by solid phase anti-CD3. cDNA was preamplified (SMART) before SAGE analysis. [SAGEMap name: CD4+CD25neg activated]
Extracted molecule total RNA
Extraction protocol N/A
 
Description Tagging_enzyme: BsmF I
CGAP_Numeric_library_ID: 1063
Laboratory: Luis Graca, Sara Thompson, Chun-Yen Lin, Elizabeth Adams, Steve Cobbold, Herman Waldmann
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL11
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15311 Cancer Genome Anatomy Project (CGAP) Mouse SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAACAA 1 46.99
AAAAAAGTCA 1 46.99
AAAAAATAAA 3 140.98
AAAAAATTTT 1 46.99
AAAAACAATC 1 46.99
AAAAACAGGT 1 46.99
AAAAACAGTG 1 46.99
AAAAACCAAA 1 46.99
AAAAACTAAA 1 46.99
AAAAAGGGTG 1 46.99
AAAAAGTCGA 1 46.99
AAAAAGTGGC 1 46.99
AAAAATAGAA 1 46.99
AAAAATCATC 5 234.97
AAAAATGACA 1 46.99
AAAAATGGAA 1 46.99
AAAAATGGCA 1 46.99
AAAAATGTGG 1 46.99
AAAACAAGCC 1 46.99
AAAACACAAG 1 46.99

Total number of rows: 8197

Table truncated, full table size 153 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap