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Sample GSM3929672 Query DataSets for GSM3929672
Status Public on Sep 06, 2019
Title Blood_untrained_E2_1_89_rep1
Sample type RNA
 
Source name Peripheral blood, untrained, E2, 1_89, replicate 1
Organism Homo sapiens
Characteristics tissue: whole blood
gender: female
age: 36.44
participant: 23
timepoint: E2
rin-value: 8.8
cho-first-round(y/n): y
Extracted molecule total RNA
Extraction protocol Whole blood samples were collected in PAXGene Blood RNA Tubes (BD Biosciences). Total RNA including miRNAs was isolated using the PAXGene Blood miRNA kit (Qiagen) according to manufacturers recommendations.
Label Cyanine 3
Label protocol The expression profile of 2549 human miRNAs was determined using SurePrint G3 8x60k miRNA microarrays (Agilent) according to the manufacturers recommendations
 
Hybridization protocol Agilent protocols.
Scan protocol Array´s were scanned with the Agilent Scanner with default settings.
Description blood-borne miRNA sequencing
Data processing Raw expression values were extracted using the Feature Extraction Software of Agilent. Raw signal intensities were quantil-normalized and log2 transformed.
 
Submission date Jul 06, 2019
Last update date Sep 08, 2019
Contact name Fabian Michael Kern
Organization name Saarland University
Department Center for Bioinformatics
Lab Chair for Clinical Bioinformatics
Street address Campus E2 1
City Saarbrücken
State/province Saarland
ZIP/Postal code 66123
Country Germany
 
Platform ID GPL25134
Series (1)
GSE133910 Systematic assessment of blood-borne microRNAs highlights molecular profiles of endurance sport and carbohydrate uptake

Data table header descriptions
ID_REF
VALUE quantil normalized, log2 transformed intensity values for all samples in set

Data table
ID_REF VALUE
hsa-miR-495-3p 2.03506012416669
hsa-miR-1976 2.02757109227479
hsa-miR-6879-5p 5.33607453311761
hsa-miR-1973 1.60567311271002
hsa-miR-6864-5p 0.2850318402956
hsa-miR-3065-3p 0.665073443944388
hsa-miR-548am-5p 1.23807176063625
hsa-miR-4778-3p 0.479363920849184
hsa-miR-15a-3p 2.88612094484552
hsa-miR-181c-3p 1.55623680290664
hsa-miR-1914-3p 3.91907115584778
hsa-miR-6128 -1.22538863109428
hsa-miR-4999-3p 1.48070009470162
hsa-miR-6873-3p 1.44728308917295
hsa-miR-6841-5p 0.162715706513214
hsa-miR-552-5p 1.06278309988563
hsa-miR-6817-5p -0.62564798766404
hsa-miR-4633-5p 1.765244605031
hsa-miR-4704-3p 0.915026488019352
hsa-miR-329-3p 2.05019896886158

Total number of rows: 2549

Table truncated, full table size 80 Kbytes.




Supplementary file Size Download File type/resource
GSM3929672_US11153896_257015615914_S01_miRNA_107_Sep09_2_1.txt.gz 7.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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