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Sample GSM393952 Query DataSets for GSM393952
Status Public on Aug 20, 2009
Title CD4-HDAC3
Sample type SRA
 
Source name CD4+ T cell
Organism Homo sapiens
Characteristics cell type: CD4+ T cell
antibody: anti-HDAC3 Ab
sirna: n/a
treatment: n/a
Treatment protocol Treatment protocol as described in Wang et al., 2009
Growth protocol Growth protocol as described in Wang et al., 2009
Extracted molecule genomic DNA
Extraction protocol Extract protocol as described in Wang et al., 2009
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Description CD4 HDAC3
ChIP-Seq, genomic DNA
Data processing Sequence reads were obtained and mapped to the human (March 2006, hg18) genomes using the Illumina Genome Analyzer Pipeline. More details as described in Wang et al., 2009
 
Submission date Apr 18, 2009
Last update date May 15, 2019
Contact name Chongzhi Zang
Organization name University of Virginia
Street address P. O. Box 800717
City Charlottesville
State/province VA
ZIP/Postal code 22908
Country USA
 
Platform ID GPL9052
Series (1)
GSE15735 Genome-wide mapping of HATs and HDACs in human CD4+ T cells
Relations
SRA SRX017705
BioSample SAMN00009880

Supplementary file Size Download File type/resource
GSM393952_CD4-HDAC3-vstep.txt.gz 11.8 Mb (ftp)(http) TXT
GSM393952_CD4-HDAC3.bed.gz 82.2 Mb (ftp)(http) BED
GSM393952_CD4-HDAC3_genes.txt.gz 18.3 Kb (ftp)(http) TXT
GSM393952_CD4-HDAC3_islands.bed.gz 89.4 Kb (ftp)(http) BED
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data are available in SRA

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