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Sample GSM400967 Query DataSets for GSM400967
Status Public on May 24, 2009
Title Tdrd1-associated
Sample type SRA
 
Source name Testes
Organism Mus musculus
Characteristics strain: C57BL/6
age: Adult
tissue: testes
Treatment protocol Immunoprecipitated Tdrd1 complexes were treated with Proteinase K and associated RNAs were extracted by phenol. Small RNA libraries were prepared with Illumina small RNA preparation kit.
Growth protocol Mouse testes extract
Extracted molecule total RNA
Extraction protocol Immunoprecipitation
 
Library strategy RIP-Seq
Library source transcriptomic
Library selection other
Instrument model Illumina Genome Analyzer
 
Description library_strategy = Illumina small RNA library preparation kit
library_source: Protein-associated small RNAs
library_selection: Immunoprecipitation and gel elution of ~28-30 nt RNAs by radioactive spike labelling
Data processing Alignment with mouse genome July 2007, mm9 assembly
 
Submission date May 08, 2009
Last update date May 15, 2019
Contact name Ramesh Pillai
E-mail(s) ramesh.pillai@unige.ch
Organization name University of Geneva
Department Department of Molecular Biology
Street address 30, Quai Ernest-Ansermet
City Gneveva
ZIP/Postal code CH-1211
Country Switzerland
 
Platform ID GPL9185
Series (1)
GSE16023 Loss of the Mili-interacting Tdrd1 activates transposons and alters Mili-associated small RNA profile
Relations
SRA SRX011862
BioSample SAMN00004024

Data table header descriptions
SEQUENCE
COUNT readcount

Data table
SEQUENCE COUNT
TAGACTGTCTCTGTTCATCAAGGAA 1
TGAGAATAATGAAGATGTAGGCAAATGG 1
CTCTGTAGACCAGGTGGCGGAGATTA 1
AAGAGCAAGAGGATGGAGAAATCT 1
TGAGATTCAGTTGTAGCTGTGCAGA 1
ACCAAGAAGAAAGGCGTGAGGCGG 1
AAGGTTAGCAGAGGCCTGTGGAAGAAAT 1
AGAAACTGGCTGGTGTCACTGCACT 1
TAATATTACTCGGGCTTGTTTGTCGTC 3
TATTACTCGGGCTTGTTTGTCGTC 1
TATGACTGTAATAGGAGAAGCTGACA 1
AAACAAACACCGGCCTAAGCATGGCAAA 1
TGACAATAAGTAGAAACCTTAGTA 1
GCTGTCACTTCGTAGCTGTTCCGGC 1
ACTTCGTAGCTGTTCCGGCTTCCTCT 1
TGCTGAAGATTGTGAATTTATTCAAAG 1
TGAAATGAAAAGAAGTTCCGAGGAC 1
TGAAATGAAAAGAAGTTCCGAGGACA 1
TGAAAAGAAGTTCCGAGGACAAG 1
TGAAAAGAAGTTCCGAGGACAAGCA 1

Total number of rows: 503854

Table truncated, full table size 14405 Kbytes.




Supplementary data files not provided
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Processed data included within Sample table
Raw data are available in SRA
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