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Sample GSM400968 Query DataSets for GSM400968
Status Public on May 24, 2009
Title Mili-wt-associated
Sample type SRA
 
Source name Testes
Organism Mus musculus
Characteristics strain: C57BL/6
age: Adult
tissue: testes
Treatment protocol Lysate preparation
Growth protocol Mouse testes extract
Extracted molecule total RNA
Extraction protocol Immunoprecipitation
 
Library strategy RIP-Seq
Library source transcriptomic
Library selection other
Instrument model Illumina Genome Analyzer
 
Description library_strategy: Illumina small RNA library preparation kit
library_source: Protein-associated small RNAs
library_selection: Immunoprecipitation and gel elution of ~28-30 nt RNAs by radioactive spike labelling
Data processing Alignment with mouse genome July 2007, mm9 assembly
 
Submission date May 08, 2009
Last update date May 15, 2019
Contact name Ramesh Pillai
E-mail(s) ramesh.pillai@unige.ch
Organization name University of Geneva
Department Department of Molecular Biology
Street address 30, Quai Ernest-Ansermet
City Gneveva
ZIP/Postal code CH-1211
Country Switzerland
 
Platform ID GPL9185
Series (1)
GSE16023 Loss of the Mili-interacting Tdrd1 activates transposons and alters Mili-associated small RNA profile
Relations
SRA SRX011863
BioSample SAMN00004025

Data table header descriptions
SEQUENCE
COUNT readcount

Data table
SEQUENCE COUNT
TGGTAAAAGGCAAGTACAAGAACATA 1
TGTATACGGGACAGTTGAAACAAGCA 1
ACTGGAAACACAGGTACTCAGGCCAAT 1
TAGGAATTTGAGTAGAATTGGTGGTC 1
TCCCAAAATATGGATTTAATGAAGGAC 2
AGATAAATAGGAAAGTAAGAAAATGGG 1
TAATATTACTCGGGCTTGTTTGTCGTC 3
TATGACTGTAATAGGAGAAGCTGACA 1
TGATAAATGTGCTTGAGAGGCTTCTGTA 1
TACAAATCACGTTCCAGGACAGCCA 1
TTCAGACTCTTAAGATCTTTCTGCTG 1
TGCTGAAGATTGTGAATTTATTCAAA 1
TGAAATGAAAAGAAGTTCCGAGGACA 2
TGAAATGAAAAGAAGTTCCGAGGACAA 1
AAATGAAAAGAAGTTCCGAGGACAAGC 2
TGAAAAGAAGTTCCGAGGACAAGCAA 5
TGAAAAGAAGTTCCGAGGACAAGCAAGA 1
TAAAACATTTATAAATCTGATGACGCACA 1
TATAAATCTGATGACGCACATCTCCA 1
TGATGACGCACATCTCCAAAGAACA 1

Total number of rows: 388863

Table truncated, full table size 11220 Kbytes.




Supplementary data files not provided
SRA Run SelectorHelp
Processed data included within Sample table
Raw data are available in SRA
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