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Sample GSM400969 Query DataSets for GSM400969
Status Public on May 24, 2009
Title Mili-Tdrd1 KO associated
Sample type SRA
 
Source name Testes
Organism Mus musculus
Characteristics strain: C57BL/6
tissue: testes
Treatment protocol Lysate preparation
Growth protocol Mouse testes extract
Extracted molecule total RNA
Extraction protocol Immunoprecipitation
 
Library strategy RIP-Seq
Library source transcriptomic
Library selection other
Instrument model Illumina Genome Analyzer
 
Description 15 dpp
library_strategy: Illumina small RNA library preparation kit
library_source: Protein-associated small RNAs
library_selection: Immunoprecipitation and gel elution of ~28-30 nt RNAs by radioactive spike labelling
Data processing Alignment with mouse genome July 2007, mm9 assembly
 
Submission date May 08, 2009
Last update date May 15, 2019
Contact name Ramesh Pillai
E-mail(s) ramesh.pillai@unige.ch
Organization name University of Geneva
Department Department of Molecular Biology
Street address 30, Quai Ernest-Ansermet
City Gneveva
ZIP/Postal code CH-1211
Country Switzerland
 
Platform ID GPL9185
Series (1)
GSE16023 Loss of the Mili-interacting Tdrd1 activates transposons and alters Mili-associated small RNA profile
Relations
SRA SRX011864
BioSample SAMN00004026

Data table header descriptions
SEQUENCE
COUNT readcount

Data table
SEQUENCE COUNT
TTTTGAACGATACAGAGAAGATTAGCA 1
TAAAAGGACAGTTATACAATTTCTCCAG 1
TGCTGAAGAGAATCACAATAATTTGGG 2
TCCAGTGCTGAAGAGAATCACAATAATTTG 1
TGAAAAATACTGAGGAGAACATTGGG 1
GTAAGGATCAATAGAAGCAGAATACTCACA 1
TCGTGTAGGAGAATGCGAATCGATCCATA 1
TGAGAACAATAGACTCAAGGCAGAGAA 1
TACAAGATCAGAATAGGACATGATGGA 1
TATCAGAAATATGGTCAGGACAAGAA 1
TACATGGACACACGTGTAGGCACATAAAA 3
TACATGGACACACGTGTAGGCACATAAAATA 1
ACATGGACACACGTGTAGGCACATAAA 1
TGGACACACGTGTAGGCACATAAAATA 1
TCACACTCAAACAGTGCAGGATTTCTAGGTG 1
TCGCTGTAGAAGAGTGGCTTAGACTCT 1
TGGCCATAGCAGGACTGATGGATGTCAA 1
TAGCAGGACTGATGGATGTCAAGGAA 3
TAATAAAGGTTCCCGTAAAGCAGACTGTTT 1
TGTAGATGGTAAGAGACTCATGTGGCTTC 1

Total number of rows: 1606988

Table truncated, full table size 47885 Kbytes.




Supplementary data files not provided
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Processed data included within Sample table
Raw data are available in SRA
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