|
| Status |
Public on Aug 21, 2020 |
| Title |
2009092_VMT10606A1 |
| Sample type |
SRA |
| |
|
| Source name |
Hippocampus
|
| Organism |
Chlorocebus sabaeus |
| Characteristics |
age: under 1 yr
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted with PerfectPure (Gentra Systems Inc.) processed with Ribo-Zero Gold kit (Epicentre, WI) to remove ribosomal RNAs.
Sequencing libraries were prepared using Illumina stranded TruSeq RNA sample prep kit following manufacturer's protocol.
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2500 |
| |
|
| Data processing |
Reads were aligned using STAR aligner to the Chlorocebus_sabeus 1.1 genome assembly
Gene counts were generated from uniquely aligned reads using the HTSeq script and default parameters
Genome_build: Chlorocebus_sabeus 1.1 NCBI genome build
Supplementary_files_format_and_content: tab-delimited text file includes raw counts for each sample
|
| |
|
| Submission date |
Aug 23, 2019 |
| Last update date |
Aug 21, 2020 |
| Contact name |
Ivette Zelaya |
| E-mail(s) |
izelaya.08@ucla.edu
|
| Organization name |
University of California, Los Angeles
|
| Street address |
695 Young Drive South, Rm 1524 Gonda
|
| City |
Los Angeles |
| State/province |
CA |
| ZIP/Postal code |
90095-1761 |
| Country |
USA |
| |
|
| Platform ID |
GPL18770 |
| Series (1) |
| GSE136255 |
Developmental patterns in the hippocampal transcriptome of the vervet monkey |
|
| Relations |
| BioSample |
SAMN12627987 |
| SRA |
SRX6755126 |
