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Sample GSM4096366 Query DataSets for GSM4096366
Status Public on Jun 05, 2020
Title AN48: patient 40
Sample type RNA
 
Source name conjunctival cells
Organism Homo sapiens
Characteristics age: 51
gender: F
disease: AAK
Stage: Severe
tissue: conjunctival cells
Extracted molecule total RNA
Extraction protocol Total RNA including miRNAs was isolated using the Qiagen miRNeasy Kit according to manufacturers recommendations.
Label Cy3
Label protocol miRNA Complete Labeling and Hyb Kit (Agilent, Cat. No 5190-0456)
 
Hybridization protocol The expression profile of 2549 human miRNAs was determined using SurePrint G3 8x60k miRNA microarrays (Agilent) according to the manufacturers recommendations
Scan protocol Array´s were scanned with the Agilent Scanner with default settings.
Description miRNAs in embryonic culture medium
Data processing Raw expression values were extracted using the Feature Extraction Software of Agilent. Raw signal intensities were quantil-normalized and log2 transformed.
 
Submission date Sep 25, 2019
Last update date Jun 05, 2020
Contact name Nicole Ludwig
E-mail(s) n.ludwig@mx.uni-saarland.de
Phone 004968411626269
Organization name Saarland University
Department Human Genetics
Street address Kirrberger Strasse
City Homburg
ZIP/Postal code 66421
Country Germany
 
Platform ID GPL25134
Series (2)
GSE137995 Conjunctival mRNA and miRNA expression profiles in congenital aniridia are genotype and phenotype dependent (AKK miRNA)
GSE137997 Conjunctival mRNA and miRNA expression profiles in congenital aniridia are genotype and phenotype dependent

Data table header descriptions
ID_REF
VALUE quantil normalized, log2 transformed intensity values for all samples in set

Data table
ID_REF VALUE
hsa-miR-495-3p 1.340186677
hsa-miR-1976 1.509183181
hsa-miR-6879-5p 4.152435534
hsa-miR-1973 3.137207065
hsa-miR-6864-5p 0.366403202
hsa-miR-3065-3p 1.213387429
hsa-miR-548am-5p 1.430825843
hsa-miR-4778-3p 0.043085262
hsa-miR-15a-3p 1.399341768
hsa-miR-181c-3p 1.367431073
hsa-miR-1914-3p 2.247041928
hsa-miR-6128 0.020402759
hsa-miR-4999-3p 0.313909969
hsa-miR-6873-3p 0.989255979
hsa-miR-6841-5p 0.405462183
hsa-miR-552-5p 0.735038299
hsa-miR-6817-5p 0.579190893
hsa-miR-4633-5p 1.286227377
hsa-miR-4704-3p 0.747205334
hsa-miR-329-3p 1.285384113

Total number of rows: 2549

Table truncated, full table size 66 Kbytes.




Supplementary file Size Download File type/resource
GSM4096366_US11153896_257015615899_S01_miRNA_107_Sep09_2_2.txt.gz 7.0 Mb (ftp)(http) TXT
Processed data included within Sample table

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