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Sample GSM416753 Query DataSets for GSM416753
Status Public on Aug 25, 2009
Title HeLa
Sample type SRA
 
Source name cell line
Organism Homo sapiens
Characteristics cell line: HeLa
Growth protocol RNA was harvested from exponentially growing cells
Extracted molecule total RNA
Extraction protocol Total RNA extracted using standard Trizol extraction. Total RNA fractionated on 15% polyacrylamide gel and 3' and 5' adaptors sequentially ligated requiring a 3' hydroxyl group and 5' phosphate
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection size fractionation
Instrument model Illumina Genome Analyzer
 
Description none
Data processing Reads containing linker matches were mapped (after removing linkers) to predicted pre-miRNAs (MirBase version 12.0)
 
Submission date Jun 12, 2009
Last update date May 15, 2019
Contact name Christine Mayr
E-mail(s) mayrc@mskcc.org
Organization name Whitehead Institute
Street address 9 Cambridge Center
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
 
Platform ID GPL9052
Series (1)
GSE16579 miRNA expression of human cancer and mouse cell lines
Relations
SRA SRX012255
BioSample SAMN00004408

Data table header descriptions
SEQUENCE
COUNT counts

Data table
SEQUENCE COUNT
TAGCTTATCAGACTGATGTTGACTCGTATGCCGTCT 84080
TAGCTTATCAGACTGATGTTGATCGTATGCCGTCTT 76676
TTAACGCGGCCGCTCTACAATAGTGATCGTATGCCG 75453
AGCGTGTAGGGATCCAAATCGTATGCCGTCTTCTGC 67857
AGCGTGTAGGGATCCAAATCGTATGCCGTCTTCTGT 63472
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 36186
TGAGGTAGTAGTTTGTGCTGTTTCGTATGCCGTCTT 35574
TGGCTCAGTTCAGCAGGAACAGTTCGTATGCCGTCT 27660
CATTAACGCGGCCGCTCTACAATAGTGATCGTATGC 24762
TGAGGTAGTAGGTTGTATAGTTTCGTATGCCGTCTT 24080
TAGCTTATCAGACTGATGTTGACTCGTATGCCGTTT 23406
TGGCTCAGTTCAGCAGGAACAGTCGTATGCCGTCTT 21505
GGCATTAACGCGGCCGCTCTACAATAGTGATCGTAT 21461
AGCGTGTAGGGATCCAAATCGTATGCCGTCTTTTGT 20659
TGAGGTAGTAGGTTGTGTGGTTTCGTATGCCGTCTT 19104
TAGCTTATCAGACTGATGTTGATCGTATGCCGTTTT 14011
TTAACGCGGCCGCTCTACAATAGTGATCGTATTCCG 13225
AGCGTGTAGGGATCCAAATCGTATGCCGTCTTCTTT 12281
TTCACAGTGGCTAAGTTCCGCTCGTATGCCGTCTTT 11429
TGAGGTAGTAGTTTGTGCTGTTTCGTATGCCGTTTT 10772

Total number of rows: 1193225

Table truncated, full table size 45481 Kbytes.




Supplementary data files not provided
SRA Run SelectorHelp
Processed data included within Sample table
Raw data are available in SRA
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