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Sample GSM416755 Query DataSets for GSM416755
Status Public on Aug 25, 2009
Title 143B
Sample type SRA
 
Source name cell line
Organism Homo sapiens
Characteristics cell line: 143B
Growth protocol RNA was harvested from exponentially growing cells
Extracted molecule total RNA
Extraction protocol Total RNA extracted using standard Trizol extraction. Total RNA fractionated on 15% polyacrylamide gel and 3' and 5' adaptors sequentially ligated requiring a 3' hydroxyl group and 5' phosphate
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection size fractionation
Instrument model Illumina Genome Analyzer
 
Description none
Data processing Reads containing linker matches were mapped (after removing linkers) to predicted pre-miRNAs (MirBase version 12.0)
 
Submission date Jun 12, 2009
Last update date May 15, 2019
Contact name Christine Mayr
E-mail(s) mayrc@mskcc.org
Organization name Whitehead Institute
Street address 9 Cambridge Center
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
 
Platform ID GPL9052
Series (1)
GSE16579 miRNA expression of human cancer and mouse cell lines
Relations
SRA SRX012257
BioSample SAMN00004410

Data table header descriptions
SEQUENCE
COUNT counts

Data table
SEQUENCE COUNT
TAGCTTATCAGACTGATGTTGATCGTATGCCGTCTT 144049
TAGCTTATCAGACTGATGTTGACTCGTATGCCGTCT 136341
AGCGTGTAGGGATCCAAATCGTATGCCGTCTTCTGC 88068
AGCGTGTAGGGATCCAAATCGTATGCCGTCTTCTGT 73710
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 42003
TTAACGCGGCCGCTCTACAATAGTGATCGTATGCCG 38486
GGCATTAACGCGGCCGCTCTACAATAGTGATCGTAT 31841
TAGCTTATCAGACTGATGTTGACTCGTATGCCGTTT 27204
TGAGGTAGTAGGTTGTATAGTTTCGTATGCCGTCTT 26272
TAGCACCATTTGAAATCAGTGTTTCGTATGCCGTCT 25500
AGCAGCATTGTACAGGGCTATGATCGTATGCCGTCT 24852
TGGCTCAGTTCAGCAGGAACAGTCGTATGCCGTCTT 24096
TAGCTTATCAGACTGATGTTGATCGTATGCCGTTTT 22297
AGCGTGTAGGGATCCAAATCGTATGCCGTCTTTTGT 18907
TCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAAAAA 18860
TAGCACCATCTGAAATCGGTTTCGTATGCCGTCTTT 18671
TAGCACCATCTGAAATCGGTTATCGTATGCCGTCTT 17984
TCCCTGAGACCCTAACTTGTGATCGTATGCCGTCTT 16320
TAGCAGCACGTAAATATTGGCGTCGTATGCCGTCTT 15773
AGCGTGTAGGGATCCAAATCGTATGCCGTCTTCTTT 14136

Total number of rows: 604003

Table truncated, full table size 23027 Kbytes.




Supplementary data files not provided
SRA Run SelectorHelp
Processed data included within Sample table
Raw data are available in SRA
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