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Sample GSM427017 Query DataSets for GSM427017
Status Public on Dec 01, 2009
Title I34F166
Sample type RNA
 
Source name Leukocytes, Ighrem, Rural
Organism Homo sapiens
Characteristics geographic location: Ighrem
lifestyle: rural
gender: female
tissue: peripheral blood
cell type: leukocytes
Extracted molecule total RNA
Extraction protocol Total RNA was extrated from leukocyte samples using Ambion's Leukolocks kit. Quality control was performed using Agilent's Bioanalyzer.
Label Biotin
Label protocol cDNA and cRNA labeling and amplification were all performed using a single kit: Ambion's Illumina TotalPrep RNA Amplification kit.
 
Hybridization protocol Illumina's BeadArray protocol
Scan protocol Illumina's BeadArray protocol and BeadStudio (Gene expression Module)
Description I34F
Data processing Raw data was log2 transformed and median-centered using JMP Genomics (SAS, Cary NC).
 
Submission date Jul 13, 2009
Last update date Nov 12, 2009
Contact name Youssef Idaghdour
E-mail(s) yidaghd@ncsu.edu
Organization name NCSU
Department Genetics
Lab Gibson
Street address South Gardner Hall
City Raleigh
State/province NC
ZIP/Postal code 27695
Country USA
 
Platform ID GPL6947
Series (1)
GSE17065 Geographical Genomics of Human Leukocytes Gene Expression Variation

Data table header descriptions
ID_REF
VALUE log2 transformed and median-centered signal

Data table
ID_REF VALUE
ILMN_1762337 -0.018353358
ILMN_2055271 0.216754879
ILMN_1736007 -0.307357563
ILMN_2383229 -0.040590296
ILMN_1806310 -0.085198993
ILMN_1779670 -0.136948578
ILMN_2321282 -0.198233901
ILMN_1671474 0.129057759
ILMN_1772582 -0.656777053
ILMN_1735698 0.116279336
ILMN_1653355 -0.060353105
ILMN_1717783 -0.313005865
ILMN_1705025 -0.15022422
ILMN_1814316 -0.261689262
ILMN_2359168 -0.118398658
ILMN_1731507 -0.301289606
ILMN_1787689 -0.046503307
ILMN_1745607 -0.566211124
ILMN_2136495 -0.4144477
ILMN_1668111 -0.019623796

Total number of rows: 48803

Table truncated, full table size 1209 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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