|
Status |
Public on Jul 13, 2010 |
Title |
Stage II colorectal cancer tissue samples (FFPE) 49 |
Sample type |
genomic |
|
|
Channel 1 |
Source name |
colorectal cancer
|
Organism |
Homo sapiens |
Characteristics |
tissue: colorectal cancer tumor stage: stage II
|
Extracted molecule |
genomic DNA |
Extraction protocol |
DNA isolation protocol available via www.vumc.nl/microarrays. Also described in Buffart et al, J Pathol. 2007 Jan;211(1):45-51
|
Label |
Cy3
|
Label protocol |
DNA labeling protocol according to Enzo Life Sciences
|
|
|
Channel 2 |
Source name |
male reference DNA
|
Organism |
Homo sapiens |
Characteristics |
tissue: Pooled DNA from the blood of 18 healthy individuals
|
Extracted molecule |
genomic DNA |
Extraction protocol |
DNA isolation protocol available via www.vumc.nl/microarrays. Also described in Buffart et al, J Pathol. 2007 Jan;211(1):45-51
|
Label |
Cy5
|
Label protocol |
DNA labeling protocol according to Enzo Life Sciences
|
|
|
|
Hybridization protocol |
Hybridization protocol available via www.agilent.com
|
Scan protocol |
Slides were scanned using the Agilent microarray scanner, protocol according to Agilent.
|
Description |
Pooled DNA from the blood of 18 healthy individuals
|
Data processing |
Median Signal intensity minus median Background intensity; excluding negative values
|
|
|
Submission date |
Jul 17, 2009 |
Last update date |
Jul 17, 2009 |
Contact name |
Daoud Sie |
E-mail(s) |
d.sie@vumc.nl
|
Phone |
+31 20 4442428
|
Organization name |
Vrije Universiteit Medical Center
|
Department |
Pathology
|
Lab |
Microarray Core Facility
|
Street address |
De Boelelaan 1117
|
City |
Amsterdam |
ZIP/Postal code |
1081 HV |
Country |
Netherlands |
|
|
Platform ID |
GPL8841 |
Series (1) |
GSE17181 |
Deletion of chromosome 4q predicts outcome in Stage II colon cancer |
|