NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM433931 Query DataSets for GSM433931
Status Public on Feb 01, 2010
Title HapMap normal cell line NA19153
Sample type genomic
 
Source name HapMap normal cell line NA19153
Organism Homo sapiens
Characteristics disease status: normal
Biomaterial provider Coriell cell line NA19153
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA19153
Treatment protocol cells were grown under standard conditions
Growth protocol melanoma cell lines and short-term cultures were grown as described in Lin et al, Cancer Research (2008), 68:664-673
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from melanomas as described in Lin et al, Cancer Research (2008), 68:664-673. DNA from HapMap normal samples was obtained from Coriell cell repository
Label biotin
Label protocol Standard Affymetrix protocol.
 
Hybridization protocol Standard Affymetrix protocol.
Scan protocol Standard Affymetrix protocol.
Description hybridized to Affy SNP 6.0
Data processing Probe-level intensities were scaled so that the sample-specific median value is 1000.
For further data processing details, please see: The Cancer Genome Atlas Research Network (2008) Nature, 455:1061-1068.
 
Submission date Jul 27, 2009
Last update date Nov 21, 2009
Contact name Michael Berger
E-mail(s) berger@broadinstitute.org
Organization name The Broad Instititute
Department Cancer Program
Street address 7 Cambridge Center
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
 
Platform ID GPL6801
Series (2)
GSE17359 Affymetrix SNP array data for melanoma short-term cultures and cell lines
GSE17593 Melanoma short-term cultures and cell lines: expression profiling and CNV analyses

Data table header descriptions
ID_REF
VALUE signal intensity

Data table
ID_REF VALUE
SNP_A-2131660 4189.571
SNP_A-1967418 671
SNP_A-1969580 2932.5
SNP_A-4263484 1748.5
SNP_A-1978185 1538.5
SNP_A-4264431 1162.71
SNP_A-1980898 1256.759
SNP_A-1983139 2309.677
SNP_A-4265735 1555
SNP_A-1995832 1437.5
SNP_A-1995893 1841.5
SNP_A-1997689 2886.356
SNP_A-1997709 1059
SNP_A-1997896 1831.5
SNP_A-1997922 1082
SNP_A-2000230 3311.18
SNP_A-2000332 3206.5505
SNP_A-2000337 2049.5
SNP_A-2000342 2665
SNP_A-4268173 966.096

Total number of rows: 1855448

Table truncated, full table size 36587 Kbytes.




Supplementary file Size Download File type/resource
GSM433931.CEL.gz 29.6 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap