NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM456572 Query DataSets for GSM456572
Status Public on Oct 14, 2009
Title hESC-NANOG-1b
Sample type SRA
 
Source name embryonic stem cells
Organism Homo sapiens
Characteristics cell line: H1
chip antibody: NANOG
Extracted molecule genomic DNA
Extraction protocol See http://bioinformatics-renlab.ucsd.edu/RenLabLibraryProtocolV1.pdf
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
 
Data processing Base calling performed with Illumina Genome Analyzer Pipeline Software version 1.0
eland_multi
- Generated using ELAND
- ELAND parameters:
1. Mapping length: 25 bases
2. Maximum number of matches (0 mismatches, 1 mismatch, 2 mismatches): 250,250,250

bed (hg18)
- Generated using a custom perl script
- Input was the eland_multi file.
- Only reads mapping uniquely were retained.
- Read length is 36
- The score field contains the number of copies of the read
 
Submission date Sep 25, 2009
Last update date May 15, 2019
Contact name Bing Ren
E-mail(s) biren@ucsd.edu
Organization name University of California, San Diego
Street address 9500 Gilman Drive
City La Jolla
State/province CA
ZIP/Postal code 92093
Country USA
 
Platform ID GPL9115
Series (1)
GSE18292 Chromatin States in Human ES Cells Reveal Key Regulatory Sequences and Genes Involved in Pluripotency and Self-renewal
Relations
SRA SRX011618
BioSample SAMN00003933

Supplementary file Size Download File type/resource
GSM456572_UCSD_30RKDAAXX_1.bed.gz 44.2 Mb (ftp)(http) BED
GSM456572_UCSD_30RKDAAXX_1_eland_multi.txt.gz 479.0 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data are available in SRA

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap