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Sample GSM458535 Query DataSets for GSM458535
Status Public on Mar 22, 2010
Title QF1160MB
Sample type SRA
 
Source name melanoblast
Organism Homo sapiens
Characteristics cell line: primary melanoblast
Extracted molecule total RNA
Extraction protocol The small RNA libraries were constructed using a Digital Gene Expression (DGE) Small RNA sample prep kit (Illumina, San Diego, Ca) as per the manufacturer's instructions.
 
Library strategy miRNA-Seq
Library source transcriptomic
Library selection size fractionation
Instrument model Illumina Genome Analyzer II
 
Description We sequenced 12 small RNA libraries using Illumina's GAII platform.
Processed data file build: hg18
Data processing Illumina Pipeline software followed by miRanalyzer for miRNA analysis
 
Submission date Oct 02, 2009
Last update date May 15, 2019
Contact name Mitchell Stark
E-mail(s) mitchelS@qimr.edu.au
Organization name QIMR
Street address 300 Herston Rd Herston
City Brisbane
ZIP/Postal code 4006
Country Australia
 
Platform ID GPL9115
Series (1)
GSE18381 Characterization of the melanoma miRNAome by deep sequencing
Relations
SRA SRX018396
BioSample SAMN00010663

Data table header descriptions
SEQUENCE
COUNT unique read count

Data table
SEQUENCE COUNT
TGAGGTAGTAGATTGTATAGTTTCGTATGCCGTCTT 826247
TGAGGTAGTAGGTTGTATAGTTTCGTATGCCGTCTT 357848
TGAGGTAGTAGTTTGTGCTGTTTCGTATGCCGTCTT 106808
TGAGGTAGTAGATTGTATAGTTTCGTATTCCGTCTT 93348
TGAGGTAGGAGGTTGTATAGTTTCGTATGCCGTCTT 91572
TGAGGGGCAGAGAGCGAGACTTTTCGTATGCCGTCT 82615
ACTGGACTTGGAGTCAGAAGGCTCGTATGCCGTCTT 78548
AAAAGCTGGGTTGAGAGGGCGATCGTATGCCGTCTT 71127
AGAGGTAGTAGGTTGCATAGTTTCGTATGCCGTCTT 71081
TAGCACCATCTGAAATCGGTTATCGTATGCCGTCTT 65704
TGAGGTAGTAGATTGTATAGTTTCGTATGCCGTTTT 57987
AGCAGCATTGTACAGGGCTATGATCGTATGCCGTCT 56739
TGAGGTAGTAGGTTGTGTGGTTTCGTATGCCGTCTT 51952
TGAGGTAGTAGTTTGTACAGTTTCGTATGCCGTCTT 50723
TGAGGTAGTAGATTGTATAGTTATCGTATGCCGTCT 49210
TCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAAAAA 35350
TGAGGTAGTAGGTTGTATAGTTTCGTATTCCGTCTT 35078
AAAAGCTGGGTTGAGAGGGCGAATCGTATGCCGTCT 28178
TATTGCACTTGTCCCGGCCTGTTCGTATGCCGTCTT 27264
TGAGGTAGTAGGTTGTATAGTTATCGTATGCCGTCT 26331

Total number of rows: 166703

Table truncated, full table size 6381 Kbytes.




Supplementary data files not provided
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