NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM458540 Query DataSets for GSM458540
Status Public on Mar 22, 2010
Title D20
Sample type SRA
 
Source name secondary cutaneous melanoma
Organism Homo sapiens
Characteristics cell line: secondary cutaneous melanoma
Extracted molecule total RNA
Extraction protocol The small RNA libraries were constructed using a Digital Gene Expression (DGE) Small RNA sample prep kit (Illumina, San Diego, Ca) as per the manufacturer's instructions.
 
Library strategy miRNA-Seq
Library source transcriptomic
Library selection size fractionation
Instrument model Illumina Genome Analyzer II
 
Description We sequenced 12 small RNA libraries using Illumina's GAII platform.
Processed data file build: hg18
Data processing Illumina Pipeline software followed by miRanalyzer for miRNA analysis
 
Submission date Oct 02, 2009
Last update date May 15, 2019
Contact name Mitchell Stark
E-mail(s) mitchelS@qimr.edu.au
Organization name QIMR
Street address 300 Herston Rd Herston
City Brisbane
ZIP/Postal code 4006
Country Australia
 
Platform ID GPL9115
Series (1)
GSE18381 Characterization of the melanoma miRNAome by deep sequencing
Relations
SRA SRX018401
BioSample SAMN00010668

Data table header descriptions
SEQUENCE
COUNT unique read count

Data table
SEQUENCE COUNT
TGAGGTAGTAGATTGTATAGTTTCGTATGCCGTCTT 275235
TGAGGTAGTAGGTTGTATAGTTTCGTATGCCGTCTT 230324
TCCGGCTCGAAGGACCATCGTATGCCGTCTTCTGCT 137091
TGAGGTAGTAGGTTGTGTGGTTTCGTATGCCGTCTT 94734
TAGCACCATCTGAAATCGGTTATCGTATGCCGTCTT 80825
TCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAAAAA 80364
TGAGGTAGTAGATTGTATAGTTTCGTATTCCGTCTT 61080
TCTACAGTCCGACGATCTCGTATGCCGTCTTCTGCT 59237
TGAGGTAGTAGGTTGTATAGTTTCGTATTCCGTCTT 44923
TCCGGCTCGAAGGACCAATCGTATGCCGTCTTCTGC 43060
TCCGGCTCGGAGGACCATCGTATGCCGTCTTCTGCT 42348
TCGTATGCCGTCTTCTGCTTTAAAAAAAAAAAAAAA 41992
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 36684
AGCAGCATTGTACAGGGCTATGATCGTATGCCGTCT 32548
TCGTATGCCGTCTTCTTCTTGAAAAAAAAAAAAAAA 31669
TACAGTCCGACGATCTCGTATGCCGTCTTCTGCTTG 30870
TCCGGCTCGAAGGACCTCGTATGCCGTCTTCTGCTT 28573
TCCGGCTCGAAGGACCATCGTATGCCGTCTTCTTCT 28164
TAGCTTATCAGACTGATGTTGACTCGTATGCCGTCT 27840
TGAGGTAGTAGTTTGTGCTGTTTCGTATGCCGTCTT 27650

Total number of rows: 109721

Table truncated, full table size 4203 Kbytes.




Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap