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Sample GSM458541 Query DataSets for GSM458541
Status Public on Mar 22, 2010
Title MEL202
Sample type SRA
 
Source name primary uveal melanoma
Organism Homo sapiens
Characteristics cell line: primary uveal melanoma
Extracted molecule total RNA
Extraction protocol The small RNA libraries were constructed using a Digital Gene Expression (DGE) Small RNA sample prep kit (Illumina, San Diego, Ca) as per the manufacturer's instructions.
 
Library strategy miRNA-Seq
Library source transcriptomic
Library selection size fractionation
Instrument model Illumina Genome Analyzer II
 
Description We sequenced 12 small RNA libraries using Illumina's GAII platform.
Processed data file build: hg18
Data processing Illumina Pipeline software followed by miRanalyzer for miRNA analysis
 
Submission date Oct 02, 2009
Last update date May 15, 2019
Contact name Mitchell Stark
E-mail(s) mitchelS@qimr.edu.au
Organization name QIMR
Street address 300 Herston Rd Herston
City Brisbane
ZIP/Postal code 4006
Country Australia
 
Platform ID GPL9115
Series (1)
GSE18381 Characterization of the melanoma miRNAome by deep sequencing
Relations
SRA SRX018402
BioSample SAMN00010669

Data table header descriptions
SEQUENCE
COUNT unique read count

Data table
SEQUENCE COUNT
TGAGGTAGTAGATTGTATAGTTTCGTATGCCGTCTT 432680
TGAGGTAGTAGGTTGTATAGTTTCGTATGCCGTCTT 178288
TGAGGTAGTAGATTGTATAGTTTCGTATTCCGTCTT 40495
AGAGGTAGTAGGTTGCATAGTTTCGTATGCCGTCTT 26773
AGCAGCATTGTACAGGGCTATGATCGTATGCCGTCT 26515
ACTGGACTTGGAGTCAGAAGGCTCGTATGCCGTCTT 22806
TGAGGTAGTAGATTGTATAGTTTCGTATGCCGTTTT 21993
TGAGGTAGTAGATTGTATAGTTATCGTATGCCGTCT 21695
TGAGGTAGTAGATTGTATAGTTTCGTATGCCTTCTT 19752
TGAGGTAGTAGTTTGTACAGTTTCGTATGCCGTCTT 19429
AAAAGCTGGGTTGAGAGGGCGATCGTATGCCGTCTT 17793
TGAGGTAGTAGGTTGTGTGGTTTCGTATGCCGTCTT 17408
TGAGGTAGGAGGTTGTATAGTTTCGTATGCCGTCTT 16753
TGAGGTAGTAGATTGTATAGTTTCTTATGCCGTCTT 15803
TGAGGTAGTAGGTTGTATAGTTTCGTATTCCGTCTT 14087
CATTGCACTTGTCTCGGTCTGATCGTATGCCGTCTT 12111
AGCAGCATTGTACAGGGCTATTCGTATGCCGTCTTC 11642
TGAGGTAGTAGGTTGTATGGTTTCGTATGCCGTCTT 11430
TGAGGTAGTAGGTTGTATAGTTATCGTATGCCGTCT 9795
AAAAGCTGGGTTGAGAGGGCGAATCGTATGCCGTCT 9148

Total number of rows: 61083

Table truncated, full table size 2337 Kbytes.




Supplementary data files not provided
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