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Sample GSM458543 Query DataSets for GSM458543
Status Public on Mar 22, 2010
Title MM426
Sample type SRA
 
Source name secondary cutaneous melanoma
Organism Homo sapiens
Characteristics cell line: secondary cutaneous melanoma
Extracted molecule total RNA
Extraction protocol The small RNA libraries were constructed using a Digital Gene Expression (DGE) Small RNA sample prep kit (Illumina, San Diego, Ca) as per the manufacturer's instructions.
 
Library strategy miRNA-Seq
Library source transcriptomic
Library selection size fractionation
Instrument model Illumina Genome Analyzer II
 
Description We sequenced 12 small RNA libraries using Illumina's GAII platform.
Processed data file build: hg18
Data processing Illumina Pipeline software followed by miRanalyzer for miRNA analysis
 
Submission date Oct 02, 2009
Last update date May 15, 2019
Contact name Mitchell Stark
E-mail(s) mitchelS@qimr.edu.au
Organization name QIMR
Street address 300 Herston Rd Herston
City Brisbane
ZIP/Postal code 4006
Country Australia
 
Platform ID GPL9115
Series (1)
GSE18381 Characterization of the melanoma miRNAome by deep sequencing
Relations
SRA SRX018404
BioSample SAMN00010671

Data table header descriptions
SEQUENCE
COUNT unique read count

Data table
SEQUENCE COUNT
TGAGGTAGTAGATTGTATAGTTTCGTATGCCGTCTT 171395
TGAGGTAGTAGGTTGTATAGTTTCGTATGCCGTCTT 109449
TGAGGTAGTAGGTTGTGTGGTTTCGTATGCCGTCTT 53503
TAGCACCATCTGAAATCGGTTATCGTATGCCGTCTT 52294
TCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAAAAA 43892
TAGCTTATCAGACTGATGTTGATCGTATGCCGTCTT 38490
TACAGTCCGACGATCTCGTATGCCGTCTTCTGCTTG 25131
AGCAGCATTGTACAGGGCTATGATCGTATGCCGTCT 23769
AGCAGCATTGTACAGGGCTATTCGTATGCCGTCTTC 22604
TCCGGCTCGAAGGACCATCGTATGCCGTCTTCTGCT 22118
AGCAGCATTGTACAGGGCTATGTCGTATGCCGTCTT 18907
CATTGCACTTGTCTCGGTCTGATCGTATGCCGTCTT 18326
TGAGGTAGTAGTTTGTACAGTTTCGTATGCCGTCTT 18117
TAGCTTATCAGACTGATGTTGACTCGTATGCCGTCT 17584
ACTGGACTTGGAGTCAGAAGGCTCGTATGCCGTCTT 17566
TGAGAACTGAATTCCATGGGTTTCGTATGCCGTCTT 17506
CTACAGTCCGACGATCTCGTATGCCGTCTTCTGCTT 16669
TGAGGTAGTAGATTGTATAGTTTCGTATTCCGTCTT 13540
TATTGCACTTGTCCCGGCCTGTTCGTATGCCGTCTT 13390
TGAGGTAGTAGATTGTATAGTTTCGTATGCCGTTTT 12476

Total number of rows: 88866

Table truncated, full table size 3402 Kbytes.




Supplementary data files not provided
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