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Sample GSM458546 Query DataSets for GSM458546
Status Public on Mar 22, 2010
Title MM603
Sample type SRA
 
Source name secondary cutaneous melanoma
Organism Homo sapiens
Characteristics cell line: secondary cutaneous melanoma
Extracted molecule total RNA
Extraction protocol The small RNA libraries were constructed using a Digital Gene Expression (DGE) Small RNA sample prep kit (Illumina, San Diego, Ca) as per the manufacturer's instructions.
 
Library strategy miRNA-Seq
Library source transcriptomic
Library selection size fractionation
Instrument model Illumina Genome Analyzer II
 
Description We sequenced 12 small RNA libraries using Illumina's GAII platform.
Processed data file build: hg18
Data processing Illumina Pipeline software followed by miRanalyzer for miRNA analysis
 
Submission date Oct 02, 2009
Last update date May 15, 2019
Contact name Mitchell Stark
E-mail(s) mitchelS@qimr.edu.au
Organization name QIMR
Street address 300 Herston Rd Herston
City Brisbane
ZIP/Postal code 4006
Country Australia
 
Platform ID GPL9115
Series (1)
GSE18381 Characterization of the melanoma miRNAome by deep sequencing
Relations
SRA SRX018407
BioSample SAMN00010674

Data table header descriptions
SEQUENCE
COUNT unique read count

Data table
SEQUENCE COUNT
TGAGGTAGTAGATTGTATAGTTTCGTATGCCGTCTT 344245
TGAGGTAGTAGGTTGTATAGTTTCGTATGCCGTCTT 173510
TCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAAAAA 109507
AGCAGCATTGTACAGGGCTATGATCGTATGCCGTCT 51929
TCTACAGTCCGACGATCTCGTATGCCGTCTTCTGCT 42936
TACAGTCCGACGATCTCGTATGCCGTCTTCTGCTTG 33639
TAGCACCATCTGAAATCGGTTATCGTATGCCGTCTT 28059
TATTGCACTTGTCCCGGCCTGTTCGTATGCCGTCTT 27238
TGAGGTAGTAGATTGTATAGTTTCGTATGCCGTTTT 25954
TGAGGTAGTAGGTTGTGTGGTTTCGTATGCCGTCTT 25238
TGAGGTAGTAGATTGTATAGTTTCGTATTCCGTCTT 24785
TGAGGTAGTAGTTTGTACAGTTTCGTATGCCGTCTT 24104
AGAGGTAGTAGGTTGCATAGTTTCGTATGCCGTCTT 21723
CTACAGTCCGACGATCTCGTATGCCGTCTTCTGCTT 19790
AGCAGCATTGTACAGGGCTATGTCGTATGCCGTCTT 19637
TGAGGTAGTAGATTGTATAGTTATCGTATGCCGTCT 17635
TGGAGAGAAAGGCAGTTCCTGATCGTATGCCGTCTT 16493
TGTAAACATCCCCGACTGGAAGCTTCGTATGCCGTC 14255
TGAGGTAGTAGATTGTATAGTTTCGTATGCCTTCTT 14199
GGGAGCATCTCTCGGTCTATGCTGTTCGTATGCCGT 14126

Total number of rows: 77748

Table truncated, full table size 2976 Kbytes.




Supplementary data files not provided
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