GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM4650

Query DataSets for GSM4650

Status

Public on Mar 04, 2003

Title

Thy_N

Sample type

SAGE

Anchor

NlaIII

Tag Count

10994

Tag Length

Source name

normal thyroid tissue

Organism

Homo sapiens

Extracted molecule

total RNA

Description

This library was generated from normal human thyroid tissue collected at routine autopsy.
Standard SAGE protocol was used (Velculescu et al. Science 1995).
Data from this library was published in: 'Pauws E, Moreno JC, Tijssen M, Baas F, de Vijlder JJ, Ris-Stalpers C. J Clin Endocrinol Metab. 2000 May;85(5):1923-7'
Data was generated and analyzed at the laboratory of Pediatric Endocrinology, Academic Medial Center, Amsterdam, The Netherlands.
Keywords = thyroid, normal, tissue

Submission date

Mar 04, 2003

Last update date

Nov 19, 2008

Contact name

Erwin Pauws

E-mail(s)

e.pauws@amc.uva.nl

Phone

+31 20 566 7524

Organization name

Academic Medical Center

Lab

Pediatric Endocrinology

Street address

Meibergdreef 9

City

Amsterdam

ZIP/Postal code

1105AZ

Country

Netherlands

Platform ID

GPL4

Series (1)

GSE25754

SAGE analysis of normal human thyroid tissue

Data table header descriptions
TAG	tag sequence
COUNT	tag abundance
TPM	tags per million

Data table
TAG	COUNT	TPM
CGGTGAAAAA	210	19101.33
TGTGTTGAGA	95	8641.08
TCCCCGTACA	90	8186.28
TTGGTCCTCT	68	6185.19
CCCATCGTCC	58	5275.60
TTCATACACC	57	5184.65
CCTGTAATCC	54	4911.77
TAGGTTGTCT	52	4729.85
CGGTGAAGCA	51	4638.89
TCAGATCTTT	50	4547.94
GCATAATAGG	44	4002.18
CCACTGCACT	42	3820.27
TTGGGGTTTC	41	3729.31
GAGGGAGTTT	40	3638.35
CTAAGACTTC	38	3456.43
CTCCACCCGA	37	3365.47
CACCTAATTG	34	3092.60
GTGAAACCCC	33	3001.64
GTGAAGGCAG	33	3001.64
AGGGCTTCCA	33	3001.64

Total number of rows: 6099

Table truncated, full table size 114 Kbytes.

Supplementary data files not provided

Processed data included within Sample table