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GEO accession:
Sample GSM46921
Query DataSets for GSM46921
Status
Public on Mar 31, 2005
Title
Colon - 29255
Sample type
RNA
Source name
Colon
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Quality metric = 28S to 18S: 1.5
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 17
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 2
Pathological M: 0
Pathological Stage: 3C
Pathological Grade: 3
Pathological Dukes Stage: C
Primary Site: Colon
Histology: Mucinous Carcinoma
Submission date
Mar 31, 2005
Last update date
Aug 28, 2018
Contact name
Erin Curley
E-mail(s)
ecurley@intgen.org
Phone
602-343-8808
Fax
602-343-8440
URL
http://www.intgen.org
Organization name
IGC
Department
Lab
expO
Street address
445 N. 5th Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85004
Country
USA
Platform ID
GPL570
Series (1)
GSE2109
Expression Project for Oncology (expO)
Relations
Reanalyzed by
GSE64985
Reanalyzed by
GSE119087
Data table header descriptions
ID_REF
The name of the probe set, blank for control probes
VALUE
The signal value calculated by MAS5, normalized
ABS_CALL
The detection value calculated by the MAS5
DETECTION P-VALUE
The detection p-value calculated by the MAS5
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
547
P
0.000754
AFFX-BioB-M_at
765.1
P
0.000581
AFFX-BioB-3_at
462.3
P
0.000972
AFFX-BioC-5_at
1599.8
P
6e-005
AFFX-BioC-3_at
1885.5
P
5.2e-005
AFFX-BioDn-5_at
3764.5
P
6e-005
AFFX-BioDn-3_at
7737.8
P
7e-005
AFFX-CreX-5_at
16189.8
P
5.2e-005
AFFX-CreX-3_at
20848.9
P
4.4e-005
AFFX-DapX-5_at
24.2
A
0.39692
AFFX-DapX-M_at
46.7
A
0.470241
AFFX-DapX-3_at
18.6
A
0.327065
AFFX-LysX-5_at
4.6
A
0.672921
AFFX-LysX-M_at
6.3
A
0.794268
AFFX-LysX-3_at
16.7
A
0.300606
AFFX-PheX-5_at
5.3
A
0.672921
AFFX-PheX-M_at
6.4
A
0.852082
AFFX-PheX-3_at
28.7
A
0.48511
AFFX-ThrX-5_at
3.5
A
0.927318
AFFX-ThrX-M_at
22.3
A
0.699394
Total number of rows:
54675
Table truncated, full table size
1445 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM46921.CEL.gz
8.4 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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