|
| Status |
Public on Feb 25, 2010 |
| Title |
tumor_tissue_patient_51 |
| Sample type |
SRA |
| |
|
| Source name |
Oral squamous cell carcinoma
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: oral squamous cell carcinoma
patient: 51
|
| Treatment protocol |
None.
|
| Growth protocol |
Surgically excised human tissue.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
SOLiD whole transcriptome (WT) protocol with total RNA extracted using Qiagen RNAeasy Mini Kit. Total RNA was depleted of 18S and 28S rRNA using GLOBINclear.
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
AB SOLiD System 3.0 |
| |
|
| Data processing |
AB WT Pipeline. The reads were aligned to the human hg18 (NCBI Build 36) genome. Alignments are provided in MAX format. A MAX specification file is available on the Series GSE20116 record.
|
| |
|
| Submission date |
Feb 25, 2010 |
| Last update date |
May 15, 2019 |
| Contact name |
Brian Tuch |
| Organization name |
Life Technologies
|
| Street address |
850 Lincoln Center Dr.
|
| City |
Foster City |
| State/province |
CA |
| ZIP/Postal code |
94404 |
| Country |
USA |
| |
|
| Platform ID |
GPL9442 |
| Series (1) |
| GSE20116 |
RNA-Seq of oral squamous cell carcinomas and matched normal tissues |
|
| Relations |
| SRA |
SRX017078 |
| BioSample |
SAMN00009372 |
