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Sample GSM531767 Query DataSets for GSM531767
Status Public on Aug 13, 2010
Title Mature mushrooms
Sample type SAGE
Anchor DpnII
Tag Count 4151536
Tag Length 16
 
Source name Mushrooms
Organism Schizophyllum commune
Characteristics developmental stage: mature mushrooms
strain: Dikaryon, resulting from a cross of the co-isogenic monokaryotic strains 4-40 (CBS 340.81) and 4-39 (CBS 341.81)
Growth protocol Mature mushrooms of 3 days old were picked from dikaryotic cultures that had grown for 8 days in the light.
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using TRIzol (Invitrogen) and purified over a column (Qiagen RNeasy Mini). PolyA RNA was isolated using oligo-dT beads.
 
Description Anchoring enzyme: DpnII
Data processing Tags of 16 bp were identified using custom scripts. Note that the restriction site of DpnII (GATC) is not included in these 16 bp.
 
Submission date Apr 08, 2010
Last update date Aug 13, 2010
Contact name H.A.B. Wösten
Organization name Utrecht University
Street address Padualaan 8
City Utrecht
ZIP/Postal code 3584 CH
Country Netherlands
 
Platform ID GPL10299
Series (2)
GSE21265 Mushroom development in S. commune
GSE23531 Effect of sc3 and sc4 on aerial hypha formation

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
GGTTCCGACAGGCATC 141578 34102.56
GACCAGAGCCAGCTGG 137406 33097.63
AAGGTTCTCGACGTCT 122128 29417.55
AAAAAAAAAAAAAAAA 105194 25338.57
CGTGGAAGACGCTCTG 54540 13137.31
AGGCTCTATTCGAGAG 36186 8716.29
TCGGCGCAGCTCCGCC 35343 8513.23
GAATTGACGGAAATTG 29112 7012.34
TCAATCGCATGTGCCA 25251 6082.33
CCGAATAACTAGCCAT 23529 5667.54
GGCAACTCGACCACGC 21192 5104.62
TGGCTTGAGGGATTGG 20152 4854.11
ATGCGCGCTACGCACG 17466 4207.12
ATCTACGATATCTTCC 16981 4090.29
ACTGGCCTTGTCGGCT 16925 4076.80
TCTTCATACCTCGCCT 16586 3995.15
GAGGAATGCGTGGAAA 16305 3927.46
CGTTTTAGGCAAGGGA 14298 3444.03
GTCGGACTGTAGAACT 14224 3426.20
CTGAATAACCAGCTAT 14051 3384.53

Total number of rows: 267911

Table truncated, full table size 6314 Kbytes.




Supplementary data files not provided

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