|
| Status |
Public on Apr 08, 2022 |
| Title |
Blood sample from individual 5 |
| Sample type |
genomic |
| |
|
| Source name |
Blood sample
|
| Organism |
Homo sapiens |
| Characteristics |
individual id: 5_5
gender: Female
tissue: Blood
disease state: No active inflammatory disease
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA was extracted from blood stored in EDTA tubes using the QIAamp Blood Mini kit.
|
| Label |
C-Bio and A-DNP
|
| Label protocol |
Standard Illumina label protocol
|
| |
|
| Hybridization protocol |
Standard Illumina hybridization protocol
|
| Scan protocol |
Standard Illumina scanning protocol
|
| Description |
Sample ID: 5
|
| Data processing |
Genomic DNA extracted from blood was genotyped using the Infinium Global Screening Array-24 v1.0 BeadChip (Illumina).
Primary assessment and SNP call rate quality control of SNP intensity output files were performed using GenomeStudio software (Illumina).
Genotype: AA,AB,BB,or NC (no call)
Processed data file onek1k_genotype_matrix.txt.gz is linked as supplementary file at the foot of the Series record.
|
| |
|
| Submission date |
Feb 15, 2022 |
| Last update date |
Apr 09, 2022 |
| Contact name |
Joseph E Powell |
| Organization name |
Garvan Institute of Medical Research
|
| Street address |
384 Victoria Street
|
| City |
Darlinghurst |
| State/province |
NSW |
| ZIP/Postal code |
2010 |
| Country |
Australia |
| |
|
| Platform ID |
GPL28939 |
| Series (2) |
| GSE196829 |
Single-cell eQTL mapping identifies cell type specific genetic control of autoimmune disease [Genotype_data] |
| GSE196830 |
Single-cell eQTL mapping identifies cell type specific genetic control of autoimmune disease |
|
