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GEO accession:
Sample GSM591682
Query DataSets for GSM591682
Status
Public on Sep 11, 2010
Title
Myers_HeLa-S3_cell_2x75_200_1
Sample type
SRA
Source name
HeLa-S3
Organism
Homo sapiens
Characteristics
cell line: HeLa-S3
cell organism: Human
cell description: cervical carcinoma
cell karyotype: cancer
cell lineage: ectoderm
cell sex: F
localization: cell
readtype: 2x75
insertlength: 200
replicate: 1
Biomaterial provider
ATCC
Growth protocol
Cells were grown according to ENCODE cell culture protocols:
http://genome.ucsc.edu/ENCODE/protocols/cell/human/HeLa-S3_protocol.pdf
Extracted molecule
polyA RNA
Extraction protocol
For extraction protocol details see:
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg18&g=wgEncodeCaltechRnaSeq
Library strategy
RNA-Seq
Library source
transcriptomic
Library selection
cDNA
Instrument model
Illumina Genome Analyzer II
Data processing
For data processing details see:
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg18&g=wgEncodeCaltechRnaSeq
Submission date
Sep 08, 2010
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL9115
Series (1)
GSE23316
ENCODE Caltech RNA-seq
Relations
Reanalyzed by
GSE97211
SRA
SRX026691
BioSample
SAMN00113234
Supplementary file
Size
Download
File type/resource
GSM591682_wgEncodeCaltechRnaSeqPairedRep1Helas3CellPapErng32aR2x75.bed12.gz
838.9 Mb
(ftp)
(http)
BED12
GSM591682_wgEncodeCaltechRnaSeqRawData5Rep1Helas3CellPapErng32aR2x75.rpkm.gz
330.0 Kb
(ftp)
(http)
RPKM
GSM591682_wgEncodeCaltechRnaSeqRawData6Rep1Helas3CellPapErng32aR2x75.rpkm.gz
6.9 Mb
(ftp)
(http)
RPKM
GSM591682_wgEncodeCaltechRnaSeqRawSignalRep1Helas3CellPapBb2R2x75.bedgraph.gz
203.3 Mb
(ftp)
(http)
BEDGRAPH
GSM591682_wgEncodeCaltechRnaSeqSplicesRep1Helas3CellPapBb2R2x75.bed12.gz
150.3 Mb
(ftp)
(http)
BED12
SRA Run Selector
Processed data provided as supplementary file
Raw data are available in SRA
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