|
| Status |
Public on Dec 19, 2023 |
| Title |
Postransplant lymphoproliferative disorder (PTLD) 29 |
| Sample type |
genomic |
| |
|
| Source name |
transmural ileum
|
| Organism |
Homo sapiens |
| Characteristics |
disease state: PTLD
morphology: Monomorphic PTLD
diagnosis: BL
gender: male
tissue preparation: FFPE
|
| Treatment protocol |
none
|
| Growth protocol |
none
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA from formalin-fixed paraffin-embedded (FFPE) was extracted using AllPrep DNA/RNA FFPE Qiagen extraction kit (Qiagen, Hilden, Germany)
|
| Label |
Biotin
|
| Label protocol |
Affymetrix OncoScan™ FFPE Assay kit /GPL18602
|
| |
|
| Hybridization protocol |
Samples were hybridized onto OncosCan Array for 16h at 49º using Affymetrix Hybridization oven.
|
| Scan protocol |
Affymetrix® GeneChip® Scanner 3000G to detect target bound to Oncoscan array after staining with Biotin.
|
| Description |
Hybridized to Affymetrix OncoScan FFPE Assay
|
| Data processing |
Nexus biodiscovery software
Gains and losses were evaluated with visual inspection by 2 different observers using Nexus Biodiscovery software (Biodiscovery, Hawthorne CA, USA). The CNAs with a minimum size of 100kb were considered real. Loss of heterozigosity regions where considered when size was >5Mb.
|
| |
|
| Submission date |
Mar 09, 2022 |
| Last update date |
Dec 19, 2023 |
| Contact name |
Itziar Salaverria |
| E-mail(s) |
isalaver@clinic.cat
|
| Organization name |
Hospital Clínic
|
| Street address |
Rossello 153
|
| City |
Barcelona |
| ZIP/Postal code |
08036 |
| Country |
Spain |
| |
|
| Platform ID |
GPL18602 |
| Series (1) |
| GSE198253 |
Unravelling the heterogeneous molecular landscape of pediatric post-transplant lymphoproliferative disorders |
|
