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Sample GSM5968492 Query DataSets for GSM5968492
Status Public on Mar 01, 2023
Title Allo spleen cells CTLA4-Ig EPO 1
Sample type RNA
 
Source name splenic CD11b+ myeloid cells
Organism Mus musculus
Characteristics treatment: Allo spleen cells CTLA4-Ig EPO
cell type: splenic CD11b+ myeloid cells
Growth protocol Groups of wild type C57BL/6 mice were either untreated (naive, group D) or were injected i.p. with 20e6 allogeneic T cell depleted BALB/c splenocytes alone (group FN) with CTLA4-Ig (150µg i.p. once on day 2, Abatacept, Bristol-Myers Squibb, New York, NY, group DC), or CTLA4Ig plus recombinant EPO (5000 units/kg i.p. daily, epoetin alfa, Amgen, Thousand Oaks, CA, group DCE). On day 7, splenic CD11b+ myeloid cells were isolated by positive selection (kit #18970, STEMCELL, Vancouver, BC, Canada).
Extracted molecule total RNA
Extraction protocol RNA was isolated using TRIzol (Thermo Fisher Scientific, Waltham, MA) and cleaned using RNeasy Mini Kit (Qiagen, Hilden, Germany).
Label N/A
Label protocol N/A
 
Hybridization protocol N/A
Scan protocol N/A
Description DCE1
Data processing Gene expression profiling was then performed using the nCounter® Myeloid Innate Immunity Panel (NanoString Technologies, Seattle, WA). The normalized data were log2 transformed.
 
Submission date Mar 23, 2022
Last update date Mar 03, 2023
Contact name Weijia Zhang
E-mail(s) weijia.zhang@mssm.edu
Organization name Icahn School of Medicine at Mount Sinai
Department Renal
Lab Bioinfomatics
Street address 1 Gustave L. Levy Pl
City New York
State/province NY
ZIP/Postal code 10029
Country USA
 
Platform ID GPL25266
Series (1)
GSE199270 Linking erythropoietin to regulatory T-cell-dependent allograft survival through myeloid cells

Data table header descriptions
ID_REF
VALUE normalized

Data table
ID_REF VALUE
Il4 2.85387332
Cx3cr1 8.36799558
Ear3 10.32960675
Ccl28 1.116907726
Nfatc2 7.645687391
Ccr7 10.37114901
Ccl22 5.116907726
Tnfaip3 11.33203621
Ptprb 1.116907726
Ccl21a 3.232384944
Trim9 2.85387332
Olr1 4.175801415
Ets1 11.10890189
Serpine1 2.991376844
Stat5a 7.520629912
Flrt2 2.991376844
Hip1r 7.246190743
Ndufa7 8.611430009
Ctla4 6.326361092
Mob3c 6.218445753

Total number of rows: 734

Table truncated, full table size 12 Kbytes.




Supplementary file Size Download File type/resource
GSM5968492_20190523_PSH_052319-1_DCE1_03.RCC.gz 8.5 Kb (ftp)(http) RCC
Processed data included within Sample table

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