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Sample GSM5968497 Query DataSets for GSM5968497
Status Public on Mar 01, 2023
Title Allo spleen cells CTLA4-Ig 2
Sample type RNA
 
Source name splenic CD11b+ myeloid cells
Organism Mus musculus
Characteristics treatment: Allo spleen cells CTLA4-Ig
cell type: splenic CD11b+ myeloid cells
Growth protocol Groups of wild type C57BL/6 mice were either untreated (naive, group D) or were injected i.p. with 20e6 allogeneic T cell depleted BALB/c splenocytes alone (group FN) with CTLA4-Ig (150µg i.p. once on day 2, Abatacept, Bristol-Myers Squibb, New York, NY, group DC), or CTLA4Ig plus recombinant EPO (5000 units/kg i.p. daily, epoetin alfa, Amgen, Thousand Oaks, CA, group DCE). On day 7, splenic CD11b+ myeloid cells were isolated by positive selection (kit #18970, STEMCELL, Vancouver, BC, Canada).
Extracted molecule total RNA
Extraction protocol RNA was isolated using TRIzol (Thermo Fisher Scientific, Waltham, MA) and cleaned using RNeasy Mini Kit (Qiagen, Hilden, Germany).
Label N/A
Label protocol N/A
 
Hybridization protocol N/A
Scan protocol N/A
Description DC2
Data processing Gene expression profiling was then performed using the nCounter® Myeloid Innate Immunity Panel (NanoString Technologies, Seattle, WA). The normalized data were log2 transformed.
 
Submission date Mar 23, 2022
Last update date Mar 03, 2023
Contact name Weijia Zhang
E-mail(s) weijia.zhang@mssm.edu
Organization name Icahn School of Medicine at Mount Sinai
Department Renal
Lab Bioinfomatics
Street address 1 Gustave L. Levy Pl
City New York
State/province NY
ZIP/Postal code 10029
Country USA
 
Platform ID GPL25266
Series (1)
GSE199270 Linking erythropoietin to regulatory T-cell-dependent allograft survival through myeloid cells

Data table header descriptions
ID_REF
VALUE normalized

Data table
ID_REF VALUE
Il4 3.468254142
Cx3cr1 8.20393104
Ear3 8.91592779
Ccl28 0.66089922
Nfatc2 8.34037932
Ccr7 11.49813292
Ccl22 5.152752317
Tnfaip3 12.77203489
Ptprb 2.245861721
Ccl21a 3.120330839
Trim9 3.66089922
Olr1 4.870352586
Ets1 12.12186698
Serpine1 4.184461176
Stat5a 7.732361583
Flrt2 2.245861721
Hip1r 8.136632651
Ndufa7 8.487447707
Ctla4 7.694322222
Mob3c 6.54354227

Total number of rows: 734

Table truncated, full table size 12 Kbytes.




Supplementary file Size Download File type/resource
GSM5968497_20190523_PSH_052319-1_DC2_08.RCC.gz 8.6 Kb (ftp)(http) RCC
Processed data included within Sample table

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