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Sample GSM5968501 Query DataSets for GSM5968501
Status Public on Mar 01, 2023
Title Allo spleen cells 2
Sample type RNA
 
Source name splenic CD11b+ myeloid cells
Organism Mus musculus
Characteristics treatment: Allo spleen cells
cell type: splenic CD11b+ myeloid cells
Growth protocol Groups of wild type C57BL/6 mice were either untreated (naive, group D) or were injected i.p. with 20e6 allogeneic T cell depleted BALB/c splenocytes alone (group FN) with CTLA4-Ig (150µg i.p. once on day 2, Abatacept, Bristol-Myers Squibb, New York, NY, group DC), or CTLA4Ig plus recombinant EPO (5000 units/kg i.p. daily, epoetin alfa, Amgen, Thousand Oaks, CA, group DCE). On day 7, splenic CD11b+ myeloid cells were isolated by positive selection (kit #18970, STEMCELL, Vancouver, BC, Canada).
Extracted molecule total RNA
Extraction protocol RNA was isolated using TRIzol (Thermo Fisher Scientific, Waltham, MA) and cleaned using RNeasy Mini Kit (Qiagen, Hilden, Germany).
Label N/A
Label protocol N/A
 
Hybridization protocol N/A
Scan protocol N/A
Description D2
Data processing Gene expression profiling was then performed using the nCounter® Myeloid Innate Immunity Panel (NanoString Technologies, Seattle, WA). The normalized data were log2 transformed.
 
Submission date Mar 23, 2022
Last update date Mar 03, 2023
Contact name Weijia Zhang
E-mail(s) weijia.zhang@mssm.edu
Organization name Icahn School of Medicine at Mount Sinai
Department Renal
Lab Bioinfomatics
Street address 1 Gustave L. Levy Pl
City New York
State/province NY
ZIP/Postal code 10029
Country USA
 
Platform ID GPL25266
Series (1)
GSE199270 Linking erythropoietin to regulatory T-cell-dependent allograft survival through myeloid cells

Data table header descriptions
ID_REF
VALUE normalized

Data table
ID_REF VALUE
Il4 3.508952211
Cx3cr1 7.80663276
Ear3 8.422240578
Ccl28 1.923989711
Nfatc2 8.346895453
Ccr7 11.79927831
Ccl22 5.941911619
Tnfaip3 12.69943538
Ptprb 2.409416538
Ccl21a 3.302501334
Trim9 3.923989711
Olr1 4.061493235
Ets1 11.93996222
Serpine1 4.508952211
Stat5a 7.95078977
Flrt2 3.302501334
Hip1r 8.097916643
Ndufa7 8.316307134
Ctla4 8.643720768
Mob3c 6.447551667

Total number of rows: 734

Table truncated, full table size 12 Kbytes.




Supplementary file Size Download File type/resource
GSM5968501_20190523_PSH_052319-1_D2_10.RCC.gz 8.5 Kb (ftp)(http) RCC
Processed data included within Sample table

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